Rhopalosiphum maidis (corn leaf aphid): 113557270
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Entry
113557270 CDS
T06065
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03020
RNA polymerase
rmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113557270
09124 Replication and repair
03420 Nucleotide excision repair
113557270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113557270
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113557270
Enzymes [BR:
rmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113557270
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113557270
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113557270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
113557270
NCBI-ProteinID:
XP_026818498
LinkDB
All DBs
Position
4:46514301..46529942
Genome browser
AA seq
1862 aa
AA seq
DB search
MAASDSKAPIRTVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVI
DRFSRCQTCAGNMTECCGHFGHIELAKPVFHIGFLTKAIKILRCVCFYCSKLLVSPTHPK
VKEIVMKSKGQQRKRLAFVYDLCKGKNICEGGDELDINKDNVNDSNMPPKKQGHGGCGRY
QPTIRRVGLDLTAEWKHVNEDSQEKKIPLTAERVYEILKHITDEEVVIMGMDPKFARPDW
MILTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHIIAENI
RMLQYHVATLVDNDSPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDQMLELVRRGNSQYPGAKYIIRDNGERI
DLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAIRK
MTKRDVFIEKEQMMNLLMHLPIWDGKMPTPCILKPKPMWTGKQLFSLIIPGNVNMIRTHS
THPDEEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR
FYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKAHNMDLEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNSLKAMVVSGAKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQSIA
TIEPSHKKFEDEFKFDVSNERHMRKIFTEDVLKEMMGSNDTVAELEKEWEQLNNDRDTLR
EIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGPTDLNPIKVVNGVKKLLDKCVIVAGED
ELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQAQAQPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEMPDFDPSRI
SPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLILRIRIMNGEDG
KMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGIDSIGKVYMHLPQTDSKKRIIITDT
GEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTV
LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASH
AEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDNGYMGMGGGGMFMAAG
TPSMSPAMTPWDQTSTPIYQNSWSSSLETGMTPGGPGFSPAGSSEASGTSPFWMSSGGTP
GSPGSPGMATSPYVPSPSSMSPNYNYPSSPQFGSLSPSMTPTNYSPTSPQYSATQQDTLK
YSSMSPKYNYSPTSPSYSPTSPSYSHTSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPQY
AASSPSYTPSATSGTSNYKYSPTSPSVAVSPTYSPTSPMYSPSNASYSPSSLQHTPNAGG
TQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSPGVGSPHYSPSSPSYSPTSPNYSGPD
EP
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggctgccagtgattcaaaggcgccaatccgaactgtcaaacgagtgcagttcggtata
ttatctgcggatgaatgccggcgcatgtctgttaccgaagggggcattcgttttgcagag
acgatggaaggtggacgccccaagcttggtggactcatggatccccggcaaggcgttatc
gatcgtttctcaagatgtcaaacatgcgcaggtaacatgaccgaatgttgtggacatttt
ggccatattgaactggctaaaccagtatttcacataggatttctaaccaaagccataaaa
attctgcgttgcgtttgcttttactgttccaaattattagttagccctactcatcccaaa
gtaaaagaaattgttatgaaatcaaaaggacaacaaagaaaacgtttagcttttgtttat
gacttatgtaagggtaaaaatatttgtgaaggaggtgatgaacttgatatcaataaagat
aatgttaacgattcaaatatgcctccaaaaaaacaaggtcatggtggttgtggtcgttat
caaccaactataaggcgtgtgggtttggacttaacggctgaatggaaacatgtcaatgaa
gattcccaagagaaaaaaataccacttacagctgaaagagtttatgaaattttaaaacac
attactgatgaagaagttgtgattatgggcatggacccaaaatttgcacgtcctgattgg
atgatactaacagtattacctgttccacctttacctgtacgtccagcaattgttatgttt
ggatcaatgagaaatcaagatgatttgactcataaactgtctgacataataaaatgtaat
aatgaattaattcgtaatgaacagtctggtgccgctacacatattatagctgaaaatatt
agaatgttacaataccatgtggcaactttagttgataacgatagtcctggcctaccaaga
gcaatgcaaaagtctggcaagcctttaaaagcaattaaagctcgtttaaagggtaaagaa
ggcagaattcgaggaaacttgatgggaaagcgtgtagatttctctgctcgtactgttatt
acacctgatccaaacttacgaattgatgaagttggtgtacctcgcactattgctcaaaac
atgacatttccagaaattgttactccatttaacattgatcaaatgctagaattggttcgt
cgtggtaattcacagtaccctggagctaagtacattatacgtgataatggtgaaagaatt
gatttacgtttccatcccaaaccatcagatttacatctgcaatgtggttataaagtggaa
agacacataaaagatggtgacttagtagtttttaacagacagcctactttacataaaatg
agtatgatgggtcacagagtcagagtcttaccatggtctacatttaggatgaatttaagt
tgtacatctccttacaatgctgattttgatggtgatgaaatgaaccttcatgttccacaa
tctatggaaacaagagctgaagtagaaaatattcatattactcctagacaaattattact
ccccaagctaataaacctgtcatgggaattgtacaagacacattgacagctatcagaaaa
atgacaaaaagagatgtatttattgagaaggaacaaatgatgaatttattaatgcatctt
cccatctgggatggaaaaatgccaactccttgtattttaaaaccaaaaccaatgtggaca
ggaaaacaacttttttctttaattatccctggaaatgtcaacatgatacgaactcattcc
actcatcctgatgaagaggataatggaccttacaaatggatatcacccggtgatacaaaa
gttatggttgagcatggtgagttagtgatgggaatattatgtaagaaaactttaggtaca
tcagctggatcattgcttcacatatgtatgttggaattgggacatgaagtatgtggacgg
ttctatggtaatattcaaactgtagttaataactggcttttatatgaaggccattctatt
ggtattggtgatactattgctgatccccaaacttatttggagattcaaagagcaattaaa
aaagctaaagaagatgtaatagaggtgatacaaaaagcacataatatggatcttgagcca
acaccgggtaatactcttcgtcaaacttttgaaaatcaagtaaacagaattttaaatgat
gctcgtgacaaaactggaggttctgctaaaaaatctttgactgaatataatagccttaaa
gctatggttgtatctggtgccaaaggttcaaacattaacatttctcaggttattgcttgt
gtaggtcaacagaacgtagaaggtaaaagaataccatttggttttcgaaaacgtacattg
ccacattttattaaagatgattatgggcccgaatcaagaggctttgtagaaaactcctat
ctagctggattaacaccttcagagttttacttccatgctatgggaggtcgtgaaggtctt
attgatactgctgtgaaaactgctgaaacaggttatatccagcgacgtttgatcaaagct
atggaatctgttatggtccactatgatggaactgtacgtaactctgttggccagttgatt
cagttacgttatggagaagatggtctttgtggagaagcagtagaattccaaagtattgct
acaatagaaccatcacacaagaaatttgaagatgaatttaaatttgatgtttcaaatgaa
agacatatgagaaaaattttcactgaagatgttttaaaagagatgatgggtagtaacgat
actgtagctgaattagaaaaagagtgggaacagttaaacaatgatagagatactttaaga
gaaatattcccttctggtgaaagcaaagtagtattaccttgtaatctgaaacgtatgatc
tggaatgttcaaaaaatttttcacattaataaacgaggaccaacagacttgaatcctata
aaagttgtgaatggagttaaaaagctattggacaaatgtgtcattgtagctggtgaagat
gagttaagcaagaaagctaataaaaatgccactttattgtttcaatgtttggtacgttct
actttgtgcactaaattagtatctgaaaatttccgtctatcttctgaagcatttgaatgg
ttagtgggtgaaattgaaaacagatttaaacaagctcaggcacaacctggtgagatggtt
ggagcattagctgctcaaagtttaggagaaccggctactcaaatgacactgaatactttt
cattttgctggtgtatcttctaaaaatgtaaccctaggagtacctagattaaaggaaatt
attaatataagtaaaaagcctaaggctccatcactcactgtatttttaactggagcagct
gctagagatgcagaaaaggctaaaaatgtattatgtcgccttgagcatacaacattgaga
aaagtcacagcaaacacagctatttattatgatcctgatcctcaaaatacagttattaga
gaagaccaagaatttgtaaatgtatattatgaaatgcctgattttgatccttcgagaatt
tctccatggttattgcgaattgaattggatagaaaaagaatgactgataaaaaattgact
atggaagcaatatctgaaaaaatcaatgctggatttggtgacgatcttaactgtatattt
aatgatgacaacgctgacaagttaatcctacgtatacgtataatgaatggcgaagatgga
aaaatgaatgggggtgatgatgaagatactgttgataaaatggaagatgatatgttcctg
agatgtatagaagcaaacatgttatctgatatgactttacaaggtattgattctattgga
aaagtgtatatgcatttgccacaaacagattccaaaaagagaataattattacggatact
ggagagtttaaagcgattgctgattggttgttagaaaccgatggtacaagtttgatgaaa
gtgttaagtgaaagagatgttgatcctgtgagaacattctccaatgatatttgtgaaatt
ttttcggttttgggaattgaagctgtacgtaagtcagttgaaaaagaaatgaatactgta
ttgcagttctatggcttatacgtaaattatcgtcatttagcgttgttgtgcgatgttatg
acagctaaaggtcatttaatggccattactagacatggtattaatagacaagatacagga
gcattaatgagatgctcatttgaagaaacagttgatgttttattagatgctgcttcacat
gctgaagttgacccaatgagaggtgtatctgaaaacattattatgggacaattacctaga
atgggaacaggttgttttgatttgcttttggatgctgaaaaagctaaagatggtatagaa
atacctatggataatggttatatgggtatgggtggtggtggcatgtttatggctgctggt
acaccttctatgtcaccagctatgactccgtgggatcaaacatccacaccaatttatcaa
aatagttggtcatcaagtttggaaactggtatgactcctggagggccaggtttttcacca
gcaggatcaagtgaagctagtggaacatctccattctggatgtcttctggaggaactccg
ggtagtcctggatctccaggcatggctactagtccatatgtgcctagccctagttccatg
tcaccaaactataattatccttctagcccacagtttggatctttatcaccttctatgact
ccaactaattattcaccaacaagtccacaatattctgctacacaacaagacactctaaaa
tattcttccatgtctccaaagtacaattattctccaacaagcccgtcatattcaccaact
agcccttcttactctcacacttcatattctccgacaagtccttcctatagcccaacatct
ccgtcatacagccctacgtctccatcttacagtccaacatctccatcttatagcccaaca
tctccatcatatagcccaacatccccgtcgtacagccctaccagtccttcatacagccct
acatctccatcatacagtccaacatctccatcatacagtccaacttcaccatcgtatagt
cccacatcgccatcttatagtccgacgtcaccttcatacagtccgagctctccacaatat
gcagcgtcttccccatcatatacacccagtgctacatctgggaccagtaattacaaatat
tcgcctacttcgccatcggttgctgttagtcctacttattctcctaccagtccaatgtac
tcaccttcaaacgcttcttactctccatcttctctacaacatacgccaaatgctggaggt
acacaatacaatcaatcatatagtcccagttcgcctgtttattcacctaccaatttttcg
atggcgagtccaaggtattcccctacttcaccaacttattcacctggtgttggaagtcca
cattattcaccatcgtcgcccagttattcaccaacgtctccaaattatagtggaccagat
gagccttaa
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integrated database retrieval system
