Rhopalosiphum maidis (corn leaf aphid): 113557310
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Entry
113557310 CDS
T06065
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03013
Nucleocytoplasmic transport
rmd03015
mRNA surveillance pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113557310
09122 Translation
03013 Nucleocytoplasmic transport
113557310
03015 mRNA surveillance pathway
113557310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113557310
03041 Spliceosome [BR:
rmd03041
]
113557310
03009 Ribosome biogenesis [BR:
rmd03009
]
113557310
03012 Translation factors [BR:
rmd03012
]
113557310
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113557310
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113557310
mRNA cycle factors
Stress granule specific factors
113557310
Spliceosome [BR:
rmd03041
]
Complex C
Other components
EJC/TREX
113557310
Ribosome biogenesis [BR:
rmd03009
]
Eukaryotic type
90S particles
Helicases
113557310
Translation factors [BR:
rmd03012
]
Eukaryotic type
Initiation factors
eIF-4
113557310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
AAA_30
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-GeneID:
113557310
NCBI-ProteinID:
XP_026818563
LinkDB
All DBs
Position
3:55894392..55899402
Genome browser
AA seq
401 aa
AA seq
DB search
MAARRTGLLTEDLSHVEFETSEDVEVLTTFDNMKLREDLVRGIYSYGFERPSAIQQRAIK
PMIKGRDVIAQAQSGTGKTATFSIAMLQSIDSQLRDTQVLCLSPTRELAVQIQKVVLALG
DYLNVQCHACIGGTNLGEDLRKLDFGQHIVSGTPGRVFDMIRRKALRTRNIKTLVLDEAD
EMLNKGFKEQIYDVYRFLPPATQVILISATLPHEILEMTNKFMTDPIRILVKRDELTLEG
IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKVDWLTEKMRESNFTVSSMHGD
MPQKERDAIMKEFRAGQTRVLITTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR
FGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcagccagacggacaggacttcttaccgaagatttatcgcacgtcgagttcgagacc
agtgaagatgttgaagtacttacgacgttcgataatatgaagcttcgggaagacttggtt
cgtggaatatactcgtacggtttcgaacgtccatcggctattcaacaaagagctatcaag
ccaatgatcaaaggacgagatgttattgcccaggctcaatcgggaactggtaaaacggcc
acattctccattgctatgttacaatctatagacagccagttaagagatacacaagtgttg
tgtttgtcgccaactagagagctcgctgtacaaattcaaaaggtagttctggcattgggc
gattatcttaatgttcagtgccacgcgtgtattggtggtactaacctcggagaagactta
agaaaattggattttgggcaacatattgtttctggtactcctggacgtgtgtttgatatg
ataagacgaaaagcattgcgtactcgtaatattaagacattggtgttagatgaagctgat
gaaatgttaaataaaggatttaaagagcaaatatacgatgtttatcgtttcttgccacct
gctacacaagttattctaatatcagctacattaccacatgaaatattagaaatgactaac
aaatttatgaccgatccaataagaatcttagtaaaacgtgatgaattgacacttgaagga
attaaacagttctttgtagctgttgaacgtgaagaatggaaatttgataccttatgtgac
ttgtacgatacactaactataactcaggcagttattttctgcagtactaagaggaaggtt
gattggttgacagagaaaatgagagagtcaaattttactgtaagttcaatgcacggagac
atgccacaaaaagaaagggacgctatcatgaaagaatttcgtgctggacaaacgcgagtt
ttgattacaacagatatttgggctcggggaattgatgtacaacaagtgtctttggttata
aattatgatttgcccaacaaccgtgaattgtatatacacaggattggccgttctggaaga
tttggtcgcaaaggtgtggcaataaattttgttaaaagtgatgacataaggattttacgc
gatattgaacaatattactccacacaaattgatgaaatgccaatgaatgttgctgatttg
atatga
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