Rhopalosiphum maidis (corn leaf aphid): 113558521
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Entry
113558521 CDS
T06065
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
rmd04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
113558521
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
113558521
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rmd02000
]
113558521
Transporters [BR:
rmd02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
113558521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
NPC1_MLD
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
113558521
NCBI-ProteinID:
XP_026819807
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Position
1:14316516..14331390
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AA seq
1234 aa
AA seq
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MSPIIITTIAVLLALLSIIPSTRANDTCIWYGECEKIDAFRVLNCRYNGPPKPMTDPNSI
DVLKTWCPDFIQDNSKDGQTLNTCCGVDQLLTLSSSIVQAANFLHRCPSCMRTFGRFICE
LVCSPIQSQFMNVTKLTKTGTSIRELDFYISDSYMQGVYDSCKSVSNPATGELAMDVICS
GAIGCSAHKWFRFLGKNPYLGFIINYIPVVKTDNPQQFVGPVIPCNQPVDNKTTACSCMD
CEESCPLPDKIQETQKLVNVAGIEIITMSSAILFCFIMSIFTGFVCFKDVLMNGKKKKND
KHKYIVAEHTKAKHKNILETVFYKIGKYFANRSHISLMMSVCLITTLSHGIHYIKITIDP
VDLWSSPNSQCRQEREYFNTNFKPFFRTTQVIIVPNGIRDVLYNTSEGSYTFGPVFNRTF
LLEVLKLQQQIEALGSPHNGLEKVCFAPLVSKFKGSPNVSDCVVQSVWGYFGNKHYKLNR
PPNSDKYLDTLKMCFQNPYNPLCLAPYGGPVDPSVALGGFSNSSEPITKISPYEKATSLL
LTFVLNNHNSKPLLKDALEWENKFLDFMKNWTRVSKPSYMDVAYYSERSVEDELDRESHS
DVSTIAISYLVMFLYIVFTLGWSKIILSFFGIVIVISSVVCSVGFYGLIGVPLSLIVLEV
IPFIVLAVGVDNIFLIIRTYQQMDVKEDELIPDYIGRVLSKIGPSIFITTLAEITCFFIG
SLSDMPVVRSFALYAAMALVFNFLLQMSCFVGLLALDAKRKTVKQEIKKQSLVYTTFQKL
YVPTLMNKCVRPLIVLLFSAWLCMSIVVIPKIDVGLDIELTMTHDSYVLKYFKFMKRYFS
TGPPVYFVVTDGLNLTDVNDQNLLCGGTYCDPYSITNQIYRASKTANLTYINRPSTSWID
DYFDWADLSSCCKVTENDSFCPHNSDDIFNCRSCNIIKNDWGRPNVQNFSKFLPYFLQDS
PDRTCSKAGHAAYSDAISLKNNSTGPNYFMTFHTVLKTSKDYYEAMRSARSIANNMTKTI
RSKNPNTTTTVFPYSVFYVFYEQYLTIWQVCVQHLVLSLVMVTFVMWTFTNLKKSSAFIL
LIINTMITVDLLAFMYYLDISLNAISLVNIVMSIGIMVEFCGHIIFHNAKSVISCPIQRA
THSCVEVGSSVFSGITLTKFAGLAVLGFANTPVFKIFYYRMYMGIVIIAALHSLVFLPVL
LSYKGVHYVLVEKTDSSKKKTKSCKLQLLEVNVL
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccaataataatcacgaccatcgccgtcctgctcgcgctcttgtccatcatcccg
tcaacacgggctaatgatacttgcatatggtacggtgaatgcgaaaaaatagacgcattc
cgtgtacttaattgccgttataatggacccccaaaaccgatgaccgaccccaattctata
gatgttcttaaaacgtggtgccctgatttcatacaagataattcaaaagacggacaaact
cttaatacatgttgtggggtcgatcagcttttaacattgagctcaagtattgtacaggct
gcaaacttcttacatagatgtccgtcgtgtatgagaacgtttggaagatttatttgtgaa
ttggtttgttcgccaattcagagccaatttatgaacgtaaccaaattgacgaaaacaggt
acttcgatacgagagttggatttttacatttccgattcgtacatgcaaggcgtttacgat
tcgtgtaaatccgtgtcaaacccggctactggtgaattagcaatggatgttatatgttca
ggagcaataggctgttctgcacataagtggtttcgattcttgggaaaaaatccatatcta
ggtttcatcataaattacataccagttgtaaaaactgataatcctcaacaatttgtaggc
ccagtaataccgtgtaatcaaccggtcgataataaaactactgcttgtagctgtatggac
tgtgaagaaagttgtccattgccggataaaattcaagaaactcagaaattagtcaatgta
gcaggtattgaaattataactatgtcatcggcaattttattttgtttcataatgtcaata
tttactggattcgtgtgttttaaagatgtactaatgaacggaaagaagaaaaaaaacgat
aaacataaatatatagttgcagaacatactaaagcaaaacataaaaatatattggaaaca
gttttttataaaattggaaaatacttcgcgaatagatcacatatttctcttatgatgtca
gtgtgtctgataaccacattaagtcatggtattcactacataaagatcacaatcgatcca
gtagatttatggtcatctccgaatagtcaatgtcgacaagagcgtgaatatttcaataca
aattttaagccatttttccgaaccacacaagtcattatcgtaccaaacggaattcgagat
gtgctctataatacctctgaaggttcgtatacatttggaccagtgttcaaccgtacattc
ttgctggaagttctaaaattacaacagcaaattgaagccttaggcagcccacataacggg
ctagaaaaagtgtgtttcgcaccacttgtatctaaattcaaaggttcaccaaatgtttcg
gattgtgttgttcaaagtgtttggggctattttggaaacaaacattacaaactcaaccga
cctcctaactctgacaaataccttgatacattaaaaatgtgttttcagaatccgtataat
cccctttgtttagcaccttacggaggtccagttgatccatctgttgctctgggaggtttt
tccaattctagtgaaccgataaccaaaatatctccttatgaaaaagcgacatcgctttta
ttaacatttgtactgaacaatcacaacagcaaaccgttgctgaaagatgcacttgaatgg
gaaaacaaatttttggattttatgaagaactggactagagtttcgaaaccatcttacatg
gatgtagcttattattcagaacgttcggtagaagatgagttggacagagaatctcattca
gatgtgtctacaatagccataagttatttagtcatgttcttgtatatagtttttactctt
ggttggagtaaaatcatattaagtttttttggaatagtaatcgttatatcatctgtcgtt
tgttcggtcggtttttacggtctaatcggtgtaccgctgtcattgatcgtactagaggtc
ataccttttattgttcttgctgttggagttgacaatattttcttaatcattcgaacatat
caacaaatggatgtgaaagaagacgaactgattcctgattacatcggtcgtgttttaagc
aaaattggaccgtcgattttcatcactactctcgcagaaattacatgtttctttatcggc
agtttgtcagatatgcctgttgttaggtcttttgcattatatgccgcaatggctttagtg
ttcaattttttgttacagatgtcttgttttgtaggattattagcattggatgctaaacga
aaaacagttaagcaagaaattaaaaaacaaagtttagtgtatactacgtttcaaaaattg
tacgttccaactttaatgaacaaatgtgttagaccattgattgtattattatttagtgct
tggctttgtatgagtattgtggttattccgaaaattgacgtgggtctggatattgaacta
actatgacccatgattcgtatgtgcttaaatatttcaaatttatgaaacgttacttttca
actggacctcctgtttattttgtggtcaccgacgggttgaatttgactgatgtcaatgac
caaaatcttctctgtggtggtacttattgtgacccgtattcaatcactaatcaaatctac
agagcttcaaagacggcaaatttaacttatataaacaggccttcaacctcgtggattgac
gattatttcgattgggctgatctttcgagttgctgtaaagttactgagaatgatagtttt
tgtccgcacaatagtgatgatatatttaactgtagaagctgtaatatcattaaaaatgat
tggggtcgaccaaatgttcaaaatttttcaaagtttttaccatatttcctccaagatagt
ccagatcgaacgtgttcaaaagctgggcatgctgcttatagtgatgctatttctttgaaa
aataattcaactggacctaattattttatgacttttcacactgtattaaaaacatccaaa
gattattatgaagcaatgcgttctgctagatcaatagcaaataatatgactaaaacaatc
agaagcaaaaatccaaacacaaccactactgtgttcccatatagtgttttttatgtgttc
tatgaacaatacttaactatatggcaggtgtgtgttcaacatttagttttgtcattagta
atggtaacatttgtaatgtggacgtttactaatttaaaaaaatcttcagcttttattctt
ctaataattaatacaatgattacagtagacttgttagcgtttatgtactatttagatatt
tctcttaatgcgatatcattggtaaacattgtaatgtcaataggaataatggttgaattt
tgtggacatataatttttcataatgcaaaatcagttatttcttgtccaattcaacgtgcc
actcattcttgtgtagaagtcggaagttcggtgttctccggaattactttaacaaaattt
gctggtcttgctgtacttggttttgctaacacaccagtgtttaaaattttttactataga
atgtacatgggtattgttattattgctgccttgcatagtttagttttcctaccagtttta
ctgagctacaaaggtgtacattatgttctagtagaaaagactgatagttctaagaaaaaa
actaaaagttgtaagttgcaactattagaagtgaatgtgctttga
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