Rhopalosiphum maidis (corn leaf aphid): 113559264
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Entry
113559264 CDS
T06065
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04382
Cornified envelope formation
rmd04512
ECM-receptor interaction
rmd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113559264
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113559264
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113559264
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rmd04147
]
113559264
00536 Glycosaminoglycan binding proteins [BR:
rmd00536
]
113559264
Exosome [BR:
rmd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113559264
Glycosaminoglycan binding proteins [BR:
rmd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113559264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113559264
NCBI-ProteinID:
XP_026820727
LinkDB
All DBs
Position
3:complement(44341792..44378722)
Genome browser
AA seq
1780 aa
AA seq
DB search
MPRPSLLRWRHFALFVYLFTTVSTQWTPTWKDSNQTNLNEPYYGDQEVKRYTGDNRYAIS
NQRGNSTNCTPKCFAEKGSRGPPGSTGAPGPQGIQGYQGLEGLPGPVGDKGDIGPIGIRG
PKGDRGKTGIPGFPGVSGVPGQMGPQGLPGIPGLDGCNGTDGNPGLPGLPGAIGPRGYQG
ITGEKGQKGDAALTPINNKGQKGEPGLDGDRGIPGNPGFQGIQGPVGPPGETGLKGNRGP
SGLKGEKGNMGLGYEGTKGDKGIKGERGPPGQPLPNSSLIATNNGTVGPPGEPGKKGNAG
ENGEPGMKGEPGPMGDPGTPGDVGEKGEKGLIGTPGPRGRDGYHGPAGPIGQKGDRGIDG
LNGLPGRPGLKGEPGLDGAPGAAGLRGPPGQPGGGKGRPGLPGPQGPRGYPGPTGPKGLD
GIDGLPGPPGPKGNIGGQGVPGSVGLEGLQGEKGTKGEPGLTGLPGESGQRGFPGAQGPP
GPRGLVGEKGASIVGPKGYDGIDGRDGEKGLKGERGYQGERGSPGDSPTGIAGLPGVKGA
TGEKGEEGKPGIPGIPGRDGPKGEIGGRCQGCSPGDKGSKGEPGLYGTPGLKGPRGPPGE
RGYPGEPGADGLIGPTGEAGAPGLDGLQGDPGPPGEKGESAMLTYEQILDIKGETGPRGD
PGRDGLRGLDGLPGPKGMPGSDGNPGIVGEKGDRGFPGSDGIPGQTGYPGAKGEKGISIK
GEQGILGRPGIRGDKGEPGLTGPKGTPGKCELSEQERRQKGEPGSRGEKGEPGPPGIDGF
PGEKGSIGPIGPIGPIGPRGIPGLVGPRGQPGIRGEKGNTGPMGFLGEAGRDGERGYPGL
PSPKGAKGEPGVPMVGPKGSEGFPGEKGEKGLQGPFGRPGVSGEPGTPGLPGEKGIQGEA
GLEGLAGQPGPKGEPGPVGPSGPPGNDGIPGADGPKGETGLPGEPGRPGLQGFPGPKGDT
GPTGPEGPKGFSGYRGMPGAVGKPGIDGMPGEKGDKGDIGLPGISGPPGEDGLPGPQGYR
GEKGDIGFPGPPGETGLRGLPGPAGDRGPVGLPGLKGEPGPVSEKGQKGEPGESGLRGPQ
GLPGIDGLPGIKGDMGFPGIGLQGWAGQKGEPGIPAYDGRPGNDGEKGVAGVAGVPGMKG
DTGPRGVPGTPGPPGMDGIDGMKGNTGYPGIPGQEGEKGDVGYPGLPGLDGEKGERGLPG
LIGLTGLKGAMGDKGDRGLPGPAVDIKGDKGEPGPPGFPGIPGAIGPVGPSGPPGIEGEK
GDMGLPGVTGYPGPSGPRGEKGNVGPQGLPGFPGTTIKGEKGLPGLLGKHGRDGLPGLSG
EKGDKGLPGLPGLPGPIGPIGLPGSPGDVGAIGPPGFPGPPGSDGYPGAPGKDGPPGLMG
LKGEPGNPAPYGEKGDKGDVGFAGEPGYPGIKGDKGERGYQGLEGLQGVQGLPGDKGLAG
LPGKIGMPGISGVKGDKGEPGLAPPPGSKGERGLPGPVGWPGEKGDRGIDGLPGLEGLKG
EMGVPGLNGPVGPPGPEGEKGEPGIEGLPGLQGPPGQRGNDGPAGKSCESEPNYSTGILL
VKHSQSSSIPQCEPNHAKLWDGFSLLYIEGNEKSHNQDLGFAGSCIRKFSTMPFLFCDFN
NVCNYASRNDKSYWLSTNAPLPMMPVEENDIQKYISRCVVCEAPTNVIAVHSQASNIPDC
PNGWEGLWIGYSFVMHTAAGAEGGGQSLASPGSCLEDFRATPFIECNGARGTCHYFANTM
SFWMATIEVDEQFTSPKRQTLKKDDSRTRISRCQVCIRST
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcccagtctgctccgttggcggcatttcgcattattcgtctatttgtttacg
acagtatcgacgcaatggactcccacttggaaggattcaaatcaaacaaatttaaatgaa
ccatattatggagatcaagaagtaaaacgatacactggtgacaatagatatgccatttca
aaccagagaggcaactcaacaaattgtacaccaaaatgtttcgcggaaaaaggaagccga
ggaccaccgggatcaactggtgctccaggtcctcaaggaatacaaggatatcaaggactt
gaaggtcttccaggtccggtgggtgacaaaggagatattggtccaataggaatacgagga
ccaaaaggagataggggcaaaacgggtattccaggatttccaggtgtaagtggagtacca
ggacaaatgggccctcaaggattgccaggtatacctggtttagacgggtgtaatggaaca
gatggaaatcctggtcttccaggattaccaggagctattggacctcgtgggtaccaagga
ataacaggcgaaaaaggtcaaaaaggagatgctgctctaacaccaataaataacaaaggt
caaaagggagagcctggtttggatggagatcgaggaatacctggaaatcccgggtttcag
ggaatacaagggcctgttggaccaccaggagaaactggattaaaaggaaatcgtggtcct
tcgggcttaaaaggagaaaagggaaatatgggacttgggtatgaaggtactaaaggagac
aaaggtattaaaggagaacgtggaccaccaggacaacctttaccaaactcgtcgttaatt
gcaaccaacaatggaacagttgggcctcctggtgaacctggtaaaaaaggaaatgcgggt
gaaaatggtgagcctggaatgaaaggagaaccaggacctatgggtgatccaggaacacca
ggcgatgttggtgaaaaaggagaaaagggcttaataggaacaccaggaccaagaggtcgt
gatggttatcatggacctgcaggaccaattggacaaaaaggtgatcgaggaattgatggc
ttgaatggattaccaggacgacccgggcttaaaggagaaccaggattggatggagcacca
ggtgcagctgggttgcgaggacctccaggacaaccagggggcggaaaaggcagacccggt
cttcctggacctcaaggaccacgaggatatcctggacctacaggaccaaaaggtttagat
ggcatagacggcctacccggacctcctggtccaaaaggaaatattggaggacaaggagta
ccaggatctgtgggcctagaagggttacaaggtgaaaagggaacaaaaggagagccagga
cttacaggtttgcccggagaatctggtcaaagagggttccctggcgcacaaggcccacct
ggacctagaggacttgttggtgaaaagggtgcttcaattgtcggacctaaaggatacgat
ggaattgatggacgagatggtgaaaagggacttaaaggtgaacgtggttaccagggtgaa
cgaggatctccaggtgattcgccaactggtattgctggacttccaggtgtaaagggtgct
actggagaaaaaggagaagaaggaaaaccaggaattccaggaattccaggtcgagatgga
ccaaaaggtgaaataggtggacgctgccaaggctgtagcccgggagataaaggtagtaaa
ggagaacctggattatacggaactccagggttgaagggaccacgaggaccaccaggagaa
agaggatatccaggtgaacccggtgctgatggactgattggaccaactggcgaagctggt
gctcctggattagatggcctacaaggagatcctggcccacccggtgaaaaaggtgaatct
gcgatgttaacatatgaacaaatactagatataaaaggagaaactggtccacgtggagat
cctggaagagatggattacgaggattggatggactacccggacctaagggaatgccaggt
agtgatggaaaccctggaatagttggagaaaaaggtgatagaggattcccaggttctgat
ggtataccaggacaaacaggataccccggagccaaaggagaaaaaggcattagcattaaa
ggggaacaaggaattctaggaagacctggaataagaggagataaaggagagcctggatta
accggtcctaaaggaactccaggtaaatgtgaacttagtgaacaagagaggcgccaaaaa
ggcgaacctggaagtagaggagaaaagggtgaacctggtccacctggtattgatggtttt
ccgggagaaaaaggatcaataggaccaattggtccaattggaccgataggaccaagagga
attccaggtcttgttggccccagaggacaaccaggtattcgtggagaaaagggaaatact
ggaccaatgggtttccttggtgaagctgggcgtgatggagaaagaggatatccaggatta
ccttcacctaaaggtgccaaaggtgaacccggtgtacctatggttggaccaaagggttca
gaaggatttcctggtgaaaagggcgagaaaggtcttcaagggccgtttggaagaccagga
gtctctggtgaaccgggaactcctggattacctggagaaaaaggaattcaaggtgaagct
ggtttagaaggattagctgggcagccaggacctaagggagaacctggccccgtaggacca
agtggaccacccggtaatgatggcatacccggcgcagatggtccaaaaggtgaaactgga
ttaccaggtgaaccaggtagaccaggtctgcaaggattccctgggccaaaaggtgatact
ggaccgacaggcccggaaggtcctaaaggattttcaggatacagaggaatgccaggagct
gttggaaaacctggaatcgatggaatgccaggagaaaagggtgataaaggagatattgga
ttacctggaatcagtggaccacctggagaagatggtttgccaggaccacaaggatataga
ggtgaaaagggtgatataggattccccggacccccaggtgaaacgggattacgtggtctt
ccaggtcctgcaggcgaccgaggtccagtaggattaccgggattaaaaggagaacctggt
ccagtttcagaaaagggacaaaaaggagagcctggtgaatccggtcttagaggaccacaa
ggactaccaggaattgatggtttacctggaataaaaggagacatgggattccctggtatt
ggattacaaggatgggctggacaaaagggagaacccggtatacctgcatacgacggtaga
cctggaaatgatggtgaaaagggagttgctggagttgctggtgttccaggaatgaaaggt
gacacgggacctcgaggcgtcccaggaacaccaggacctccgggaatggatggtatagat
ggaatgaaaggcaatacaggttatccaggaattcctggacaagaaggtgaaaagggtgac
gttgggtaccccggattaccaggattagatggagaaaaaggagaaagaggcttaccagga
ttaattggattaactgggctaaaaggagctatgggagataaaggtgatcgaggattacca
ggtcctgcagttgatattaaaggagataaaggtgaaccagggccaccaggattcccagga
atacccggtgcaataggtcccgtcggacctagtggaccacctggtattgaaggagaaaag
ggtgacatgggattgccaggtgtaactggttatccaggtccttcaggtccaagaggagaa
aagggtaatgttggacctcaaggattaccaggcttcccaggaacgacaatcaaaggagaa
aagggattgccaggattattgggtaaacatggcagagatggactacctggcttaagtgga
gaaaaaggtgataaaggactaccaggattaccaggattacctggtccaattggaccaatt
gggttgccaggttcaccaggtgatgttggagcaattggaccaccaggtttccctggacct
ccgggatcagatggatatccaggtgcaccaggcaaggatggtccaccaggattaatggga
ttaaaaggagaaccaggaaaccctgcaccgtacggcgaaaaaggagacaagggcgatgtt
ggttttgcaggagaaccaggttatcctggaattaaaggagataagggagaaagaggttat
caaggacttgaaggattacaaggtgtacaaggtttaccaggtgacaaaggattagctgga
ctgccaggaaagataggtatgcctggaatctctggagtcaaaggtgataaaggtgaacct
ggtttagcgcctccgccaggatctaaaggagaacgaggattacctggacctgtcggttgg
ccaggtgaaaagggagaccgtggaattgacggccttcctggtttagaaggattaaaagga
gaaatgggtgttcctggtttgaatggtccagttggtcctccaggtccagaaggcgaaaag
ggtgaaccaggaatagaaggtctcccaggcttacaagggcccccgggtcaacgaggaaac
gatggacctgctggtaaatcttgtgaatcggaaccaaattattcaacgggaatattgttg
gtcaaacatagtcagagttcttcgatacctcagtgtgaaccaaatcacgcaaaactctgg
gacggattcagtttgttatacatagagggcaacgaaaaatcacacaatcaagatttagga
tttgccggttcttgtatccgaaaattctccaccatgccattcttgttctgcgactttaac
aacgtatgcaattacgcaagtagaaacgacaaatcgtattggctcagcaccaatgcacca
ttaccaatgatgccagttgaagaaaacgatattcaaaaatatatttctagatgtgttgta
tgtgaagcacctaccaacgttattgccgtacacagtcaggcgtcaaatattcccgactgc
cccaacggttgggaaggtttgtggattggatacagttttgtaatgcacacggccgcgggc
gcggaaggcggtggtcaatcgttggccagtcctggttcgtgcctggaagatttcagggct
acaccgttcatcgaatgtaacggagcgcgaggaacgtgccattatttcgccaacactatg
agtttctggatggcgaccatcgaagttgatgaacagttcaccagccccaagaggcaaaca
ttgaagaaggacgacagtcgcactcgcatcagcagatgccaagtgtgcatacgatcgact
tag
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integrated database retrieval system
