Rhopalosiphum maidis (corn leaf aphid): 113559380
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Entry
113559380 CDS
T06065
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03013
Nucleocytoplasmic transport
rmd03015
mRNA surveillance pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113559380
09122 Translation
03013 Nucleocytoplasmic transport
113559380
03015 mRNA surveillance pathway
113559380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113559380
03041 Spliceosome [BR:
rmd03041
]
113559380
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113559380
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113559380
Spliceosome [BR:
rmd03041
]
Complex C
Other components
EJC/TREX
113559380
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113559380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
113559380
NCBI-ProteinID:
XP_026820935
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All DBs
Position
4:complement(45458030..45459908)
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AA seq
423 aa
AA seq
DB search
MADADDLLDYEEDEQNETVESDDKKQAKKEVKGNYVSIHSSGFRDFLLKPEILRAIVDCG
FEHPSEVQHECIPQAMLGMDILCQAKSGMGKTAVFVLSTLQQLEVYESEVYALVLCHTRE
LAFQISKEFERFTKYLPAVKVSVFFGGVPITKDEDTLKNNKPHVVVGTPGRILELIRKKK
LVLNNLKHFILDECDKMLEILHMRSDVQEIFKNTPFGKQVMMFSATLSKEIRPVCKKFMH
QPLEVYVDDDAKLSLHGLQQYYVKLTEKEKNKKLFDLLDELEFNQVIIFVKSVQRCVVLT
ELLNEQNFPSVAMHGGMSQQDRLKFYQEFKDFQKRILVATNLFGRGMDIERVNIVINYDM
PEDTDTYLHRVARAGRFGTKGLAITFICEETDAKVLNSVQDRFDVTIGRMPNEIELSSYV
ERK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgctgatgatcttttggattacgaagaagacgaacagaacgagaccgtcgag
agcgatgacaagaaacaagccaagaaagaagtaaagggtaactatgtgtccatacacagt
tcaggtttccgtgattttctcttaaaaccggaaatactaagagcaattgtcgactgtggt
ttcgaacatccgtccgaagtgcaacacgagtgtatacctcaggctatgttgggtatggat
attttatgccaagccaaatctggtatgggtaaaacggccgtgtttgtcttatccaccttg
cagcagttggaagtgtacgagagcgaagtatacgctcttgttttatgtcatactagagaa
ttggcattccagataagtaaagaatttgaacgcttcaccaaatatttgccggcagtcaag
gtcagtgttttctttggtggtgtgcccattacaaaagacgaagataccctaaagaataat
aagccacatgtagtggttggcacaccaggtcgcatactagaactgatcagaaaaaagaaa
ttggttctcaataatttgaagcattttattttggacgagtgtgataaaatgttagagatc
ttacacatgcgaagtgatgtccaagaaatctttaagaacactccatttggcaaacaagta
atgatgttcagtgccacccttagcaaagaaatacgacctgtctgtaaaaagtttatgcat
caaccattggaagtttatgttgacgatgatgccaaactatcattacacggtctccagcag
tactatgttaaactcactgaaaaagaaaaaaataaaaaattgtttgatcttctagacgaa
ctagaattcaatcaggttatcatttttgttaaatctgttcaacgttgcgtagtattaaca
gagctgttaaatgaacaaaatttcccgtctgttgccatgcatggtggtatgtcccaacaa
gatcgtttaaagttttaccaagaattcaaagactttcaaaaacgaatattagtggctacc
aatttgtttggtcgaggaatggatattgaacgagtgaacattgttattaattatgacatg
cctgaagatacagacacctatttacatcgagtagcaagagctggacgttttggtactaaa
ggattagcaattacattcatttgtgaagaaactgatgcaaaagttttgaatagtgttcaa
gatagatttgatgtcactattggtcgaatgcctaatgaaattgagctcagttcttatgtt
gaaagaaaataa
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