Rhopalosiphum maidis (corn leaf aphid): 113559772
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Entry
113559772 CDS
T06065
Name
(RefSeq) histone deacetylase Rpd3-like isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03082
ATP-dependent chromatin remodeling
rmd03083
Polycomb repressive complex
rmd04213
Longevity regulating pathway - multiple species
rmd04330
Notch signaling pathway
rmd04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113559772
03083 Polycomb repressive complex
113559772
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113559772
04350 TGF-beta signaling pathway
113559772
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
113559772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmd03036
]
113559772
Enzymes [BR:
rmd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113559772
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113559772
HDAC complexes
Sin3A-HDAC complex
113559772
BRAF-HDAC complex
113559772
REST complex
113559772
SHIP complex
113559772
MiDAC complex
113559772
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113559772
Heterochromatin formation proteins
Other heterochromatin formation proteins
113559772
Chromatin remodeling factors
NuRD complex
113559772
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113559772
NCBI-ProteinID:
XP_026821321
LinkDB
All DBs
Position
4:75449..85389
Genome browser
AA seq
504 aa
AA seq
DB search
METVVRRLQPENYEDWFNGKDIGCHPEDDTSRDIGNYYYGQGHPMKPHRISMTHNLILNY
GLYQKMEISRPYKINAKEMTKFHSDEYIQFLKSICPDNINDYNMQMQRFNVDEDCPVFDG
LYKFCQLSAGGSVAAAVKLNKQSADICINWGGGLHHAKKSEASGFCYVNDIVLGILELLK
YHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKHGKYFPGTGDLGDIGAGEGKYYAVN
IPLRDGMDDDSYESIFVPIITKVMETFQPSAVVLQCGADSLTGDKLGCFNLTVKGHGKCV
EFVKRYGLPFLMVGGGGYTIRNVSRCWTYETAVALGAEIANELPNNDYYEYFGPDFKLHI
SPSNMKNRNTTKYLEKIKNRLFENLQMLPHAPGVQVQAIPEDGVHNESDDEDNVNPDERN
PQSITDKKISPDNEFSDSEDESMAPGVGGGGRKDNRSYKTVIPARKQACLDSNRIEVNEP
KFNIITDDKEDKSDDSNKMDAVMS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgttgtgagacgtttacaacccgaaaactatgaagactggtttaatggaaaa
gatattggttgccatccagaagacgacacttctcgtgacataggaaactattattatgga
caaggtcatcctatgaagccacataggatttcaatgactcataatttgattttaaattat
ggtttataccaaaaaatggaaatatctagaccttataaaattaatgcaaaagaaatgacc
aaatttcatagtgatgagtacatacagtttttaaaaagtatttgtcctgataatattaac
gattataacatgcaaatgcaaagattcaatgttgatgaagattgtccagtttttgatggt
ttgtacaaattttgtcagctatctgcgggcggttcagtagcagcagctgtaaaattaaat
aaacaatctgcagatatttgtatcaattggggaggtggtcttcatcacgcaaaaaaatct
gaagccagtggcttttgctatgttaatgatatagtacttggtatattagaattgcttaaa
taccatcaacgagtgttgtacattgatattgatgtccatcacggtgatggtgtcgaagaa
gcattttatacaactgatagagttatgacagtttcattccacaaacatggcaaatatttt
cctggtactggagatctcggagatattggtgctggagaaggaaagtactatgcagttaac
attcccttaagagatggaatggatgatgatagttatgaatcaatattcgtaccaataatt
actaaagtaatggagacgttccaacctagtgcagttgtattacaatgtggagcggattca
cttacaggagacaagcttggatgctttaatctaactgttaaaggtcatggcaaatgtgtt
gaatttgtaaaacgttatgggttaccctttcttatggtcggcggaggtggttacactatt
cgaaatgtatctcgatgttggacatatgaaacagctgtggccttaggagctgaaattgct
aatgaattgccgaataatgactattatgaatattttgggcccgattttaaacttcatatc
agcccttcgaatatgaaaaatagaaatactacaaagtatttggaaaaaattaaaaaccgt
ctctttgaaaacttacaaatgctacctcacgccccaggagttcaagttcaagctatcccc
gaagacggagtacacaatgagtcagacgatgaagataatgttaacccagatgaaaggaat
cctcaatctattacagataaaaaaatttcacctgataatgaatttagcgacagtgaagat
gaaagcatggctcctggtgtagggggtggtggccgaaaagataatagatcttataaaact
gtcatacctgctagaaaacaagcatgtttggactcgaataggatagaagtcaatgaacca
aaatttaatattataacagatgataaagaagacaaatctgatgattctaataaaatggat
gctgtcatgtcgtga
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