Rhopalosiphum maidis (corn leaf aphid): 113559773
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Entry
113559773 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase Rpd3-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03082
ATP-dependent chromatin remodeling
rmd03083
Polycomb repressive complex
rmd04213
Longevity regulating pathway - multiple species
rmd04330
Notch signaling pathway
rmd04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113559773
03083 Polycomb repressive complex
113559773
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
113559773
04350 TGF-beta signaling pathway
113559773
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
113559773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmd03036
]
113559773
Enzymes [BR:
rmd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113559773
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
113559773
HDAC complexes
Sin3A-HDAC complex
113559773
BRAF-HDAC complex
113559773
REST complex
113559773
SHIP complex
113559773
MiDAC complex
113559773
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
113559773
Heterochromatin formation proteins
Other heterochromatin formation proteins
113559773
Chromatin remodeling factors
NuRD complex
113559773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
113559773
NCBI-ProteinID:
XP_026821325
LinkDB
All DBs
Position
4:92245..97146
Genome browser
AA seq
488 aa
AA seq
DB search
MSITPFKKRVCYYYDSDIGNYYYGQGHPMKPHRISMTHNLILNYGLYQKMEISRPYKINA
KEMTKFHSDEYIQFLKSICPDNINDYNMQMQRFNVDEDCPVFDGLYKFCQLSAGGSVAAA
VKLNKQSADICINWGGGLHHAKNXEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGD
GVEEAFYTTDRVMTVSFHKHGKYFPGTGDLGDIGAGEGKYYAVNIPLRDGMDDDSYESIF
VPIITKVMETFQPSAVVLQCGADSLTGDKLGCFNLTVKGHGKCVEFVKRYGLPFLMVGGG
GYTIRNVSRCWTYETAVALGAEIANELPNNDYYEYFGPDFKLHISPSNMKNRNTTKYLEK
IKNRLFENLQMLPHAPGVQVQAIPEDGVHNESDDEDNVNPDERNPQSITDKKISPDNEFS
DSEDESMAPGVGGGGRKDNRSYKTVIPARKQACLDSNRIEVNEPKFNIITDDKEDKSDDS
NKMDAVMS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcacaccattcaagaaacgcgtctgttactattacgacagtgacataggaaac
tattattatggacaaggtcatcctatgaagccacataggatttcaatgactcataatttg
attttaaattatggtttataccaaaaaatggaaatatctagaccttataaaattaatgca
aaagaaatgaccaaatttcatagtgatgagtacatacagtttttaaaaagtatttgtcct
gataatattaacgattataacatgcaaatgcaaagattcaatgttgatgaagattgtcca
gtttttgatggtttgtacaaattttgtcagctatctgcgggcggttcagtagcagcagct
gtaaaattaaataaacaatctgcagatatttgtatcaattggggaggtggtcttcatcac
gcaaaaaatnctgaagccagtggcttttgctatgttaatgatatagtacttggtatatta
gaattgcttaaataccatcaacgagtgttgtacattgatattgatgtccatcacggtgat
ggtgtcgaagaagcattttatacaactgatagagttatgacagtttcattccacaaacat
ggcaaatattttcctggtactggagatctcggagatattggtgctggagaaggaaagtac
tatgcagttaacattcccttaagagatggaatggatgatgatagttatgaatcaatattc
gtaccaataattactaaagtaatggagacgttccaacctagtgcagttgtattacaatgt
ggagcggattcacttacaggagacaagcttggatgctttaatctaactgttaaaggtcat
ggcaaatgtgttgaatttgtaaaacgttatgggttaccctttcttatggtcggcggaggt
ggttacactattcgaaatgtatctcgatgttggacatatgaaacagctgtggccttagga
gctgaaattgctaatgaattgccgaataatgactattatgaatattttgggcccgatttt
aaacttcatatcagcccttcgaatatgaaaaatagaaatactacaaagtatttggaaaaa
attaaaaaccgtctctttgaaaacttacaaatgctacctcacgccccaggagttcaagtc
caagctatccccgaagacggagtacacaatgagtcagacgatgaagataatgttaaccca
gatgaaaggaatcctcaatctattacagataaaaaaatttcacctgataatgaatttagc
gacagtgaagatgaaagcatggctcctggtgtagggggtggtggccgaaaagataataga
tcttataaaactgtcatacctgctagaaaacaagcatgtttggactcgaataggatagaa
gtcaatgaaccaaaatttaatattataacagatgataaagaagacaaatctgatgattct
aataaaatggatgctgtcatgtcgtga
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