KEGG   Rhopalosiphum maidis (corn leaf aphid): 113560301
Entry
113560301         CDS       T06065                                 
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
rmd  Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rmd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113560301
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rmd03041]
    113560301
   03036 Chromosome and associated proteins [BR:rmd03036]
    113560301
Spliceosome [BR:rmd03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    113560301
 Complex B
    113560301
 Complex C
   U2 SnRNP specific factors
    113560301
Chromosome and associated proteins [BR:rmd03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    113560301
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT_2 XMAP215_CLASP_TOG Htt_N-HEAT_1 DUF2298
Other DBs
NCBI-GeneID: 113560301
NCBI-ProteinID: XP_026821884
LinkDB
Position
4:complement(9908120..9917071)
AA seq 1349 aa
MTTHADIEAQIREIQQRKKDEKQKEDDSDVGLGASGFFDQDIYNGGGKFEGYVTSIAPND
EYDDEDIDDQHYRNKKPITAPAAALKEIAQARDDEDDYDPFAERKRLQKATTDKDDDTRQ
VRRPMVISPERIDPFAEGGKTPDVGSRTYSQIMQEQKLKGEESEVRKTIIEKAKDGNLKT
NGDAKGTVRKRGRWDQVVQNGDSSGVPAKKKTNSTPWEETPKGGLSRWDETPGPTKMGAE
TPGATPGQSTRMWDATPGHTTPAAGAATPGRDTPGHIGATQTSVRRNRWDETPKTERATP
GHNSGWAETPRTDRGGIDLIQDTPTPSASKRRSRWDETPSQMTPSATPGSLTPGAATPKV
GVTPSGASMTPTPGGMTPGATPMTPMVPRTPVLSNSAATPIGHTAMGMATPTPGHLLSMT
PEQLQAYRWEREIDERNRPLTDDELDAMFPPGYKVLQPPAGYIPIRTPARKLTATPTPIA
GTPQGFFMQESVDRPTKSQIVDNQPPGNLPMLKPEDAQYFDKLLMDVDEESLTLEEQKER
KIMKLLLKIKNGTPPMRKAALRQVTDKARELGAGPLFNQILPLLMSPTLEDQERHLLVKV
IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRP
DIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILM
GCAILPHLRSLVEIIEHGLVDEQQKVRTITALAIAALAEAATPYGIESFDSVLKPLWKGI
RTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQC
CGTDGVEPQYIREDILPHFFRHFWNHRMALDRRNYRQLVDTTMEIANKVGASEIINRIVD
DLKDENEQYRKMVMETIEKTIGNLGAADIDSRLEEQLIDGILYAFQEQTNEDVVMLNGFG
MIVNQLGRRVKPYLPQICGTILWRLNNKSAKIRQQAADLIARIACIMKICQEEKLMGHLG
LVLYEYLGEEYPEVLGSILGALKGIVNVIGMTRMTPPIKDLLPRLTPILKNRHEKVQENC
IDLVGRIADRGPEYVPAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA
TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLF
QYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAAIKHMALGVFGFGCEDALIHLLNYV
WPNIFETSPHLVQAFMEAVEGLRVALGPIKILQYTLQGLFHPARKVRDVYWKIYNSLYIS
AQDALVAGYPHIENDVKNQYVRYELMYTL
NT seq 4050 nt   +upstreamnt  +downstreamnt
atgaccacgcacgcggatatcgaagcacaaatacgcgagatacagcagcgcaaaaaagat
gagaaacagaaagaagacgacagcgatgtgggtctcggggcatccggatttttcgaccaa
gacatctataacggtggtggaaagttcgagggttatgtcacgtctatcgcccccaacgac
gagtacgatgatgaagatattgatgatcaacattacagaaataaaaagcctataacagca
ccagcagctgctcttaaagaaattgcacaggctagagatgatgaagatgactatgatcct
tttgccgaaagaaaacgtcttcaaaaagcaacaacagacaaagatgatgatactcgtcaa
gttcgtaggcctatggttatatcgccagaacgtattgacccgtttgctgaaggtgggaaa
actccagatgttggatccaggacatattcacaaattatgcaagaacaaaaattaaagggt
gaagagagtgaagtacgaaaaacaattatagagaaagctaaagacggtaatcttaaaact
aatggagatgccaaaggtacagtcaggaaaagaggacgatgggatcaagttgtgcaaaat
ggtgattcttctggagtgcctgcgaaaaagaaaacaaattctaccccttgggaagaaaca
cctaagggaggcttatcacgttgggatgaaactcctggacctactaaaatgggagcagaa
acacctggcgctacacctggtcaaagtactagaatgtgggatgcaactccgggacatact
actccagctgcaggagctgcaacccctggccgtgatactccaggacatataggagctaca
caaacatcagtgcgaagaaatcgttgggatgaaactcctaaaacagaaagagctacacct
ggccataatagtggatgggctgaaactccccgcacagatcgtggaggcattgatttaatt
caagatactccaacaccatcagcgagtaaaagacgttcacgttgggatgaaacaccatct
caaatgactccatcagctacacctggtagtcttacacctggagcagccactcctaaagta
ggagttacaccatctggagcttctatgacacctactcctggtggcatgacacctggtgct
actcctatgacaccaatggtaccccgtactcctgtactttcaaatagtgccgctacacca
attggacatactgccatgggtatggcaacaccaactccaggtcatttgttgtcgatgacc
cctgaacaattacaggcttataggtgggaacgtgaaattgatgagcgcaatcgtccattg
actgatgatgagttagatgcaatgtttccacctggttataaagtacttcaaccacctgct
ggatatataccaattcgaactccagctcgtaaactaactgctacaccgacaccaatagct
ggaacaccacaagggtttttcatgcaagaatctgttgatcgtccgactaaatcacaaata
gttgacaatcaaccacctggtaatcttcctatgttaaaaccagaagatgcccagtatttt
gataaattgttgatggatgtggatgaagaaagtttaacattggaagaacaaaaagaaaga
aaaattatgaaattgcttttaaaaattaaaaatggtacaccaccaatgagaaaagctgct
ttgagacaagtaacagataaggctagagagttaggcgctggtccattatttaatcaaatt
ttgcctttacttatgtcacctacacttgaagaccaagaacggcatttattagttaaagtt
attgacagaattttgtataaacttgatgacttagtccgaccatatgtccacaaaatattg
gtcgttattgaaccacttttaattgatgaagattactatgctcgtgttgaaggacgtgaa
ataatttcaaatttagctaaagcagctggtttagctactatgatatctactatgagacct
gatattgataatattgatgaatatgtgcgtaatactacagctcgtgcatttgctgttgtt
gcttcagcgttaggtattccatcacttttaccttttttaaaagctgtatgtaaaagcaag
aaatcatggcaagctcgccatacaggtataaaaattgtacaacaaattgcaatcttaatg
ggatgtgctattctacctcatttacgctctttggtggaaattattgagcacggtttggta
gatgagcaacaaaaagtgcgaactatcacagctttagctatagctgcgttagctgaagct
gcaacaccttatggtattgaaagttttgattctgttcttaaacctttatggaagggtata
aggactcatagaggaaaaggtttagctgcatttttaaaagctattggatatttaatacct
ttgatggacgctgagtatgctaattattataccagagaagtgatgttgatcttgattcga
gagtttcagtcgcctgatgaagaaatgaaaaagattgtattgaaggtggtcaaacaatgt
tgtggaacagatggtgtggaaccacaatatattcgtgaagacattttacctcatttcttt
agacacttctggaaccacagaatggctcttgatagacgaaattatagacaattggttgat
actactatggaaatagcaaataaagttggagcatcagaaattattaatcgcatagttgac
gatttaaaagatgaaaatgaacaatatcgtaaaatggttatggaaaccattgaaaaaaca
attggtaatttaggtgcggccgacattgactctagacttgaagaacagcttattgatggt
attctttatgctttccaagaacaaacaaatgaagatgttgttatgttgaatggttttggt
atgatcgttaaccaacttggtcgacgtgttaaaccttatttacctcaaatatgtggtaca
attttatggagattaaataacaaatcggctaaaatcagacaacaagctgcagatttaatt
gctcgaatagcttgtattatgaaaatctgccaagaagaaaagttgatgggacatttgggt
ttagtgttgtatgaatacttgggtgaagaatatccagaagtgttgggaagcattttagga
gcattaaaaggtattgtaaacgtgatcggcatgacaagaatgactccgcctatcaaagac
ttgttacctcggctaacgccaattttgaaaaacagacacgagaaagtccaagaaaattgt
atcgatcttgttggtcgtattgctgatcgaggaccagagtatgtacctgccagagaatgg
atgcgaatatgtttcgaactacttgaactattaaaagcacataaaaaagctatccgcaga
gcaacagtaaatacttttggttatattgctaaagccattggacctcatgatgtattagct
acacttttaaataatttaaaagtacaagaacgacagaatcgtgtttgtacaacagttgcc
attgctatagtggctgaaacgtgttctccatttactgtattacctgcattaatgaatgaa
tatcgagtacccgaattgaatgttcaaaatggagttcttaaatcactatcatttttgttt
caatacattggtgaaatgggcaaagattatatttatgctgtcactcctcttttagaagat
gcccttatggacagagatttagtacacagacaaacagcatgcgcagctattaaacatatg
gcacttggagtttttggttttggttgtgaggatgccttaatccatttgttgaactatgtg
tggcctaacatttttgaaacatcccctcacttggtacaagcttttatggaagctgttgaa
ggtttaagggttgctcttggtcccataaaaattttacagtatacacttcaaggactcttt
catcctgctcgcaaggtacgtgatgtttactggaaaatttataattcactttacattagt
gcccaagatgctttagttgctggatatccacacatagaaaatgatgttaagaatcaatat
gtacgatatgaacttatgtatacgttataa

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