Rhopalosiphum maidis (corn leaf aphid): 113560376
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Entry
113560376 CDS
T06065
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113560376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113560376
03041 Spliceosome [BR:
rmd03041
]
113560376
03009 Ribosome biogenesis [BR:
rmd03009
]
113560376
03016 Transfer RNA biogenesis [BR:
rmd03016
]
113560376
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113560376
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113560376
Spliceosome [BR:
rmd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113560376
Complex C
U4/U6.U5 tri-SnRNP related factors
113560376
Ribosome biogenesis [BR:
rmd03009
]
Eukaryotic type
Pre-60S particles
Helicases
113560376
Transfer RNA biogenesis [BR:
rmd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113560376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113560376
NCBI-ProteinID:
XP_026822011
LinkDB
All DBs
Position
1:complement(11022255..11034252)
Genome browser
AA seq
1021 aa
AA seq
DB search
MDDFGDDLFDDFEQPSATSLSAGVQKSNDDKHNTDDNTTKRTLQLSDDEDDNLKKTKNPN
ELSALDLEVSAPRIKIFAVESLDGESCTHEIALPLNFDYTPLNRDANRKPAKVYEFELDP
FQKEAIVCIENNQSVLVSAHTSAGKTVVAEYSIALSLRESKRVIYTTPIKALSNQKYREF
HEEFVDVGLITGDVTINPSASCLIMTTEILRSMLYRGSEILKEVGWVIFDEIHYMRDKER
GYVWEETLILLPDNVRLVFLSATIPNARQFAEWVAHLHNQPCHVVYTEYRPTPLQHYLYP
AGGEGLHLIVDEHNKFREDNFAAAMNVLSNVTQPVKHYGQPNRPTANNPDNESNCFKLVK
MIMERNFAPVIVFSFSKKDCENYAMQMSKLDFTSDTEKGLIDKLFENATKVLSEEDRKLP
AVINIIPLIRRGIGIHHGGLLPILKETIEILFGEGLLKVLYATETFAMGLNMPARTVLFT
ACRKFDGKERRFITSGEYIQMSGRAGRRGLDDKGIVMLIIDEKVSPDTVRNIVQGKPDSL
NSAFHLTYNMVLNLMRVEEIDPEYMLERSFFQFQNQSAIPELVEKVKELSVEKNKIVINN
EFDVRSYFLIRQQLEDLAKQYHSFITDPKNLVPFCNPGRLVKIKKNDVDFGWGVIVNFKS
VLKSKHEGGGIGEAIINVLLNLEQSVENTEDEPVPCTSGKLGEPEIINIRHNMVEDLSSL
RLNKMPNDLKSRDSRMLLYNNVKEVLQRCSTDIPLLDPINDMHIKDPEFDKVIEQIEKFE
SRLFAHPLHEREDVDELYTLYLEKDKVDRELLKFKTELKKAKSLMQMDDLKCRKRILRRM
GYCTAGEVIETKGRIACELSSADELLMTELMFNGVFNDLSVPQTVALLSCFVCDEKSNEI
PAKTAELAGPLKKMQELARKIAKVCKDAKLDIEEDAYVEGFKPFLMDVCYEWCRGATFYQ
ICQMTDIFEGSIIRAMRRLEEILRQLIQASKSIGNTDLENKFSESVMIVKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggatgattttggtgacgatttatttgatgattttgaacaaccatctgctacttctctt
tctgctggagtacagaagtccaatgatgataaacacaatactgacgataacaccacaaaa
cgaacattacaactatctgatgatgaagatgataatttaaaaaagacaaaaaatccaaat
gaactatctgctttagatcttgaagtatcagctcccagaataaaaatttttgctgtagaa
tcccttgatggagaatcatgtacacatgaaattgctcttccattaaattttgattataca
ccattaaatcgagatgctaatagaaaaccagccaaagtatatgaatttgaattagatcct
tttcaaaaagaagctattgtttgtattgaaaataatcaatcggttcttgtatcagctcat
acatctgctggtaaaactgtagttgctgaatacagtatagccttgtctctaagagaatca
aaacgtgtaatttatactacacctataaaagcattaagtaatcaaaaatatcgtgaattt
catgaagagtttgttgacgttggtcttattacgggtgatgttactattaatccatcagcg
agttgtcttatcatgacaacagaaattcttcgttctatgttgtatcgtggttcagagatc
ttaaaagaagtaggatgggtaatatttgatgaaattcattacatgcgtgacaaggaacgt
ggttatgtttgggaagagactttaatattactaccagacaatgtgcgattggtattttta
tctgctactatacctaacgctagacagtttgctgaatgggtagctcatttgcacaatcaa
ccatgtcacgtagtatatactgaatataggcctacaccattacaacattatttatatcct
gctggtggcgaaggtttacatcttatcgtagacgaacataacaaatttcgagaagataat
tttgcagctgctatgaatgttttatctaatgttactcaaccagttaaacattatggacag
ccaaatcgacctacagctaacaatccagataatgaatctaattgcttcaagttagttaag
atgatcatggaacgaaattttgctccagttattgtattttcgttcagtaaaaaagattgt
gaaaattatgccatgcaaatgtcaaaattagattttacttcagatactgaaaaaggatta
attgataaattatttgaaaatgctacaaaagtattatcagaggaagatcgtaaactgcca
gcagttataaatataataccattaattcgacgtggtattggtattcatcatggaggtctt
ttaccaatcttaaaagaaactatagaaattttgtttggtgaaggtttactgaaagtttta
tatgctactgaaacatttgccatgggtctaaacatgcctgcaagaacagttttatttact
gcttgtcgaaaatttgatggcaaagaaagacgatttataacatcaggagaatatatccag
atgtctggaagagctggtagacgaggtttagatgacaaaggtattgttatgttgataatt
gatgagaaagttagtccagacactgtcaggaatattgtacaaggaaagcctgattcactt
aattcagcattccatttaacatataatatggttttgaatttaatgcgtgtagaagaaatc
gatccagaatatatgttagaaagaagctttttccaatttcaaaatcaatctgcaattcca
gaattagttgaaaaagtaaaagaattatcagttgaaaaaaacaaaatagtaataaataat
gaatttgacgtaagatcatattttttaattcgtcaacagttagaagatttagcgaaacaa
tatcattcttttataacagacccaaaaaatttagtacctttttgtaatccaggaagactt
gttaagattaagaaaaatgatgtggattttggctggggtgttattgttaatttcaaatct
gtattaaaaagcaaacatgaaggtggtggtattggcgaagcaataataaatgtcctattg
aatttagaacaatctgtcgaaaacacagaagatgagccagtaccatgtacttctgggaag
ttaggagaacctgaaattattaatatcagacataacatggttgaagatttaagttcttta
cgattaaacaaaatgccaaatgatttgaaatctcgtgattctcgaatgttactgtataat
aatgtaaaagaagttttacaaagatgttcaactgatattcctttattagatccaatcaat
gacatgcatatcaaagatccagagtttgataaagttattgaacaaattgaaaaatttgaa
agtagattatttgctcatccgttacatgaaagagaagatgttgatgaactttatactcta
tatttagaaaaagataaagtggatcgtgaacttttaaaatttaaaactgaactaaagaaa
gccaaatcactcatgcaaatggatgatctcaaatgtagaaaacgcatattaagaagaatg
ggctattgtactgctggagaagttatagaaactaaagggagaatagcgtgtgaattaagc
agtgctgatgaattactaatgactgaattaatgttcaatggtgtgtttaatgatttatca
gtacctcaaactgtagcattactcagttgttttgtatgtgatgaaaaaagtaacgaaata
cctgcaaaaactgctgaattagcaggacctttaaaaaaaatgcaggaacttgcaagaaaa
atagctaaagtttgtaaagatgctaaattagatattgaagaagatgcttatgtagaaggc
tttaaacctttcttaatggatgtttgttacgaatggtgtcgtggtgccactttctatcaa
atatgccaaatgactgatatatttgaaggaagcataatacgagcaatgagacgtttagaa
gaaatattaagacaattaatacaagcatccaaaagtattggcaataccgatcttgaaaat
aaatttagtgaatcggttatgattgttaaaagagatattgtatttgcagcaagtctttat
ttataa
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