Rhopalosiphum maidis (corn leaf aphid): 113561122
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Entry
113561122 CDS
T06065
Name
(RefSeq) chromatin-remodeling complex ATPase chain Iswi isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113561122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113561122
03036 Chromosome and associated proteins [BR:
rmd03036
]
113561122
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
113561122
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
113561122
RSF complex
113561122
WICH complex
113561122
B-WICH complex
113561122
NORC complex
113561122
BRF complex
113561122
NuRF complex (fruit fly)
113561122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
HAND
ResIII
HDA2-3
DEAD
CHDII_SANT-like
DBINO
Myb_DNA-binding
rve_2
DUF4800
AAA_14
Motif
Other DBs
NCBI-GeneID:
113561122
NCBI-ProteinID:
XP_026823151
LinkDB
All DBs
Position
1:complement(39120233..39129012)
Genome browser
AA seq
1048 aa
AA seq
DB search
MDSPDMEIEDDDYEPAKNTKSLGKKDNLNNSKMETSNNSGSEDEISPSKEKDGKVFGVKV
ETDRGKRFDYLLKQTEIFAHFMTANQKKDGSSTASATGNTPKKAKGRPRKPKAETGDSAD
LRHRQTEQEEDEELLKESLAADKYITQFDESPYYIQNGELRDYQVRGLNWMISLYENGIN
GILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVIVPKSTLQNWVNEFKKWCPTIRTVCM
IGDRDARVKFIRETFIPGDWDVCITSYEMIIRERAVLRKIQWRYLVIDEAHRIKNEKSKL
SEIIREFETTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDSWFNTNNCLGDNAL
IERLHAVLRPFLLRRLKSEVEKRLKPKKEVKVYVGLSKLQREWYTKVLMKDIDVVNGAGK
VEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHIVFNCGKMVVFDKLLKALKEQDS
RVLVFSQMTRMMDILEDYMHWKGYNYCRLDGQTPHEDRQRQINEYNEPNSKKFVFILSTR
AGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITENTVEEKIVER
AEVKLRLDKLVIQQGRLIDNQKNTLNKDEMLNMIRHGANHVFQSKDSEITDEDIDTILRK
GEEKTEEMKQKLESLGESSLRNFTLDAQTESSLYTFEGEDYREKQKLTGIGNWIEPPKRE
RKANYAVDAYFREALRTSEPKQPKAPRPPKQPLVQDFQFFPTRLFDLLDQEIYYYRQTVG
YKVPKNSELGADAAKIQKEEQKKIDESQPLTEEEQAEKEVLLTKGFTNWNKRDFNQFIKA
NEKYGRDDIDNISKEVEGKTAEEVREYSAVFWERCNEFQDIDRIMGQIERGESKIQRRAS
IKRALDAKMTRYRAPFHQLRISYGANKGKNYTEEEDRFLVCMLHKLGFDKENVYEELRAA
IRCAPQFRFDWFIKSRTANELQRRCNTLITLIERENQELEEKEREQKKLIKKNLKPAPSP
APVKKKTDKVDKADAGDPKSPVPKKKKK
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggatagtcctgacatggaaattgaagatgacgattacgagccggctaaaaatacaaaa
tcacttggaaaaaaagacaatttgaacaactcgaaaatggaaactagtaacaattctgga
tccgaagatgaaatatccccatccaaagaaaaagatggaaaagtttttggagttaaagtg
gaaactgaccgtggaaaaaggtttgactatcttcttaaacaaacagaaatctttgctcat
tttatgacagctaatcaaaaaaaagatggatcaagcactgctagtgctactggaaacaca
ccaaaaaaagctaagggtagaccccgtaaacctaaagctgaaactggagattctgctgac
cttcgtcatcgccaaacagaacaagaagaagatgaagagctattaaaagagtcattggca
gcagacaagtacatcactcagtttgatgaatctccgtattatatacaaaatggggaatta
cgtgattatcaagtacgtggtttgaattggatgatatcgttgtatgaaaatggaattaat
ggtattctggctgatgaaatgggcctcggtaaaactttacaaacaatatcacttttagga
tacatgaagcattatagaaatatacctggacctcacatggttattgttcctaaatcaaca
ttacaaaattgggtaaatgaatttaagaaatggtgtcccacaattcgaactgtttgtatg
attggagatagagacgcgcgggttaaatttattcgtgagacatttatacctggagactgg
gatgtttgtattacatcttatgaaatgattattcgtgagagagctgtattacgtaaaatt
caatggagatatttagtaattgatgaagctcatagaataaaaaatgaaaaaagtaaactt
tccgaaataattagggagtttgaaactacaaatcgattattgttaactggtacaccattg
caaaataatttgcatgaattgtgggcactgttgaactttttactgccagatgtgtttaat
tcatcagatgattttgattcttggtttaatacaaacaattgccttggagataatgcctta
attgaacgactgcatgctgtattaagaccatttcttttaagaagattaaaatctgaagtg
gaaaaacgtctaaaacctaaaaaagaagtcaaagtttatgttggcttaagtaaattacaa
agagaatggtatacaaaagtcttaatgaaagatatagatgtagttaatggtgctggcaaa
gtagagaaaatgagactacaaaatattcttatgcaactacgaaagtgcagtaatcaccct
tatctttttgatggtgctgaaccaggtcctccttatactactgatgaacatattgttttt
aactgtggaaaaatggttgtatttgataagttattgaaagctttaaaagaacaagattcc
cgtgtacttgtctttagtcagatgactcgtatgatggatattttggaagattatatgcac
tggaaagggtataattattgtcgtttggatggtcaaacccctcatgaagatcgccaacgt
caaattaatgagtacaatgaaccgaacagcaaaaagtttgttttcatactttctactcga
gctggtggtttaggtattaatttagctaccgcagatgttgttattatatatgattctgat
tggaatcctcaaatggacttacaagcaatggatcgagctcatagaattggacaaaaaaaa
caagttagagtattccgtcttatcactgaaaatactgttgaagaaaaaattgttgaaaga
gctgaagttaaacttaggttggataaattagttattcaacaaggtcgattgatagataat
cagaaaaatactctgaacaaggatgaaatgttgaatatgatcagacatggtgcaaatcat
gttttccagtctaaagattctgaaattactgatgaagatattgatactattttacggaaa
ggcgaagaaaagacagaagaaatgaaacaaaaattggaatctttaggagaatcgtctttg
agaaattttacattagatgctcaaacagaatcatccttgtatacatttgaaggagaagac
tatagagaaaaacaaaaattaactggtattggaaattggatagaaccacctaaacgagaa
cgcaaagctaattatgctgttgatgcctattttcgtgaagcacttagaacatctgaacct
aaacaacctaaagcacctcgaccacctaaacaaccattggttcaagatttccaattcttt
cctactcgtttatttgatttactcgatcaagaaatttattactacagacaaacggttgga
tataaagtaccaaaaaattcagaattaggtgctgatgcagctaaaatacagaaagaagaa
caaaaaaaaatagatgaatctcaaccacttactgaagaagaacaagcagaaaaagaagtt
ttattaacaaaagggtttacaaattggaataaacgtgattttaaccaatttattaaagct
aatgaaaaatatggcagagatgacattgataatatatctaaagaagtagaaggtaaaaca
gctgaagaagtaagagaatacagtgctgtgttttgggaaagatgtaacgagttccaagat
attgatagaattatgggacaaatagaacgaggagaatctaaaatacaacgccgagctagc
attaaaagagctttggatgcaaagatgacgaggtatagggctccatttcatcaattgcgc
atttcatatggagcaaacaaaggcaaaaattatactgaagaagaagatagatttttagtt
tgtatgcttcataaacttggatttgataaagaaaatgtgtatgaagaattaagagcagct
ataaggtgtgctcctcaatttagatttgattggtttattaaaagtcgtactgcaaatgaa
ctacaaaggcgatgtaatactttaattacactaatagagcgagaaaatcaagaattagaa
gaaaaagaaagagaacaaaaaaaattgataaaaaaaaatttgaagccagctccatctcct
gccccagttaaaaagaaaacagataaagttgataaggctgatgcaggtgatcctaagtca
ccagttccaaaaaaaaagaaaaagtaa
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