Rhopalosiphum maidis (corn leaf aphid): 113561145
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Entry
113561145 CDS
T06065
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113561145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113561145
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113561145
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
113561145
NCBI-ProteinID:
XP_026823186
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Position
1:complement(14852496..14864079)
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AA seq
1183 aa
AA seq
DB search
MSKNTLFNYFTRSPSSGAPKANGSPKPDGVVSSKTPSKRQLSNTNKGNSVTPKRTPKSAV
NGSSGKKTISNGASTKKTTEKRKPKPLDESMEENEENEELPMKKRRRLALEDLSGDEEDS
GDEYKPDEKSLDDSESEESPELSDSDSFIDDESDVEVSPVKKKSGKNTKSVGKSKSSKFN
KSYTPAVDKSIKEVTKGNGVDHDNWPHLKLEFLKPEKIRDANKKSPSDPNYNPRTLYVPE
DFKLTLTPGVRQWWELKAQHFDCILFFKVGKFYEMYHMDAVTTAKELNLLYMKGDFAHVG
FPETAYGRFSAILVEKGYTVARIEQTETPDMMTERCKSLKRSTKFDKVVRREICRITTKG
TRTFGIIDGETNDAENSFLIAVSEKEMSSSTSLYGVCFIDTSIGLFHLGQFEDDCHCSRL
RTLCAHYPPVQILFERNKLTVRTKKVIDTMLSGAVKDALIPDIEFWSSSKTLITLAEGDY
FKNNDNVVYPEKLKIFLGSDSDLQLNANDESEFGIRSLGAVVWYLKRCKMDFQLLSRGRF
DIYKPVDIESVELSNQDNINSKHMILDAITLKNLHILENSAGSNTGTLLNKLNHCSTPFG
KRLLYQWLCNPLTTISSIEARQNAISSLIVIPDLMHEIRSELASLPDLERLFSRIYSQSS
NGVESNHAETRAIYFEEKTYSKRKIIDFISILKGFRTSVHIMEKFQKADIKKESSESNLL
TAICNYPNNSTPGVFPYLTELLDNFENSFDHDEAMKHGRIFPEPGMDDQYDRVLEKIKEV
DVELKSYLKEQCKHFGCNVTYFGSDKKRYQLEVPDAASKRAGEGYELQNQRKGFKRFTTS
RTKELLEKMMSYEQEKIDVLKDLRERVFSRFCDKFEEWNNAIQCLATLDVFMSLAEYCRC
EEEVMCIPKFIPAIVGKKPLVELVEGRYPCGSGSESFIPNDTIIGKEEDGRWNSSLILVT
GPNMGGKSTLMRQLGIISVMAHMGCHVPAKSLVLNPIDRIFTRIGANDNIIAGESTFFVE
LCETSAILHHASRFSLVLVDELGRGTSTYDGTAIASAVVTELVQKQCRTLFSTHYHSLVE
DFKANPLVALGHMACMVEDDETNEMDGEQIQETITFLYKFANGACPKSYGFNAARLAGMP
ADIIKTGLRRSKEFETAAKRRILFKTLFSSNDISVVKKAVLAL
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaatacgctgttcaattactttaccaggtcacctagctctggagctcctaaa
gcgaatggatcacctaagcctgacggtgtagtgtcgtcgaagactccgtcaaaacgtcag
ttatcgaatactaataagggtaattctgtcactcctaagaggacaccaaaatctgcagtt
aatggaagttctggaaaaaaaaccatcagcaatggtgctagtacgaagaaaactactgaa
aaaagaaaacccaaaccgcttgatgaatctatggaagaaaatgaagaaaatgaagagttg
cctatgaaaaaacgccgtaggcttgcattagaagatttgagcggtgatgaagaagattct
ggtgatgaatataagccagatgagaagtctttagatgattcagaatctgaagaaagtcct
gaactatcggacagtgattcatttattgatgatgaatcagatgtagaagtatcccctgtc
aaaaaaaaaagtgggaaaaatacaaaatctgtaggaaaatctaaatcctccaaatttaat
aaatcatatacccctgctgtggacaaatctatcaaagaagtaaccaaaggtaatggagtt
gatcatgacaattggcctcatttaaaacttgagtttttgaaaccagaaaaaatcagagat
gctaataaaaaatcaccatctgatcctaactataatcctcgaacattatatgtaccagaa
gattttaaactgacattgactccaggtgttcgacagtggtgggagttaaaagcacaacat
tttgactgtatattattttttaaagtgggaaaattttatgagatgtatcatatggatgct
gtaacaactgctaaagaacttaatcttttatacatgaagggagactttgctcatgttgga
tttccagaaactgcttacggtcgtttttcagcaattttagtagaaaaaggttatactgtt
gctcgtatagaacagactgaaaccccggatatgatgacggaaagatgtaaaagtttaaaa
aggagtactaaatttgataaagttgtacggcgtgaaatatgtcgtattacaaccaaaggt
accagaacttttggtataattgatggtgaaacaaatgatgctgaaaattcatttttgata
gctgtatctgaaaaagaaatgagtagttcaacttctttatacggtgtgtgcttcattgat
acatctattggtctctttcatcttggacaattcgaagatgactgtcattgctcccgctta
agaactttgtgtgctcattatcccccagtacaaattttatttgaacgtaataaattgaca
gtgcgtaccaaaaaagttattgatactatgctctctggtgctgttaaagatgcactcatc
cctgacatagaattttggtcatcgtcaaaaactttgattactttagctgaaggagactac
tttaaaaataatgataatgtggtatatccagaaaaattaaaaatatttttaggcagtgac
tctgacttacaattaaatgctaatgatgaatctgagtttggtattcgtagtttgggtgct
gttgtatggtatttaaagcgatgtaaaatggatttccaacttttgtccagaggaagattt
gatatatataagccagttgatattgaatctgttgaattgtccaatcaagataatataaac
agcaaacatatgatacttgatgctataacacttaaaaacctgcatatattagaaaactct
gcaggttcaaatacaggaacattacttaacaagttaaatcattgctctacgccatttgga
aaacgattactataccagtggttgtgtaatccattaacaacaatatccagtattgaagct
agacaaaatgcaatttcttctttaattgttattcctgatttaatgcatgaaatacgatca
gaattggctagtttaccagatttagaacgtctattttccaggatttactctcagagtagt
aatggagttgaatcaaaccatgcagaaactagagcaatatactttgaagagaagacatat
tctaaaaggaaaataattgatttcatatcaattttgaaaggttttaggacaagtgttcat
ataatggaaaaatttcaaaaagctgatatcaaaaaagaaagttcagaatccaatttattg
actgctatttgtaattatcctaacaactctacacctggagtatttccttatttaactgaa
cttcttgataattttgagaattcttttgatcatgatgaagctatgaaacatggtcgtatt
tttcccgaaccaggaatggatgatcagtatgacagagttttggaaaaaattaaagaagtt
gatgttgagttaaaatcttacttaaaagaacagtgcaaacactttgggtgtaatgtcact
tactttggatctgataaaaaaaggtatcagttagaagtacctgatgctgcatcaaaaaga
gctggagaaggatatgaacttcaaaaccaaagaaaaggattcaaaagattcacaacaagt
cgtacgaaagaacttttggaaaaaatgatgagttatgaacaagaaaaaatagatgtattg
aaagatcttagagaaagagtgttttcgcgattttgtgacaagtttgaggaatggaataat
gccatccaatgtttggctacactagatgtattcatgtcattagcagaatattgccggtgt
gaagaagaagttatgtgtattcctaaatttattccagctattgttggtaaaaagccatta
gttgagctcgttgaaggacgttatccatgcggttctggtagcgagagttttattccgaac
gacacaatcatagggaaagaagaagatggaagatggaattctagtttgatattagttaca
ggccctaatatgggaggaaagtctacattgatgaggcagcttggtattatctctgttatg
gcacatatgggttgtcatgtgcctgcaaaaagtcttgttctcaatccaattgacaggata
ttcacgaggatcggtgccaatgacaatataatagcaggagagtcaacattctttgttgaa
ttgtgtgagacatcggctatacttcatcatgccagtcggttttcattagtcttagttgat
gaactgggcagaggaacgtcaacttatgatgggactgcaatcgcctctgctgttgtcact
gaactagtacaaaaacaatgccgtacattattttctacccattaccattcgttagtcgaa
gatttcaaggctaaccctttagttgcacttggtcacatggcatgcatggtagaagatgac
gaaacaaatgaaatggatggagaacaaattcaagagacaattactttcttgtataagttt
gcaaatggagcttgccctaaatcatatggttttaacgctgctcgtttggctggcatgcct
gctgacatcataaaaactggtttacgtaggtctaaagaatttgaaactgcggctaaacgc
cgaatactatttaaaacattgttttcatccaacgatatatctgttgtgaaaaaagctgtt
ttagcactatga
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