Rhopalosiphum maidis (corn leaf aphid): 113561316
Help
Entry
113561316 CDS
T06065
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03022
Basal transcription factors
rmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113561316
09124 Replication and repair
03420 Nucleotide excision repair
113561316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113561316
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113561316
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113561316
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113561316
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Ig_Cad99C_N
Motif
Other DBs
NCBI-GeneID:
113561316
NCBI-ProteinID:
XP_026823455
LinkDB
All DBs
Position
4:complement(5465273..5468016)
Genome browser
AA seq
553 aa
AA seq
DB search
MTSSEDVLLQVGPVRHKKGDGTLYVMSQHVAFILNSSDTVAISHHYRDIKMQKISSEFKN
KVQLQLVFHDETISLFQFTNSERSEAMRDRNRVKDLIQQLLPKYQKQANKEFGEKSRILG
ENRMLFQLYQDLVITHVITSEEFWSQHVPYHLATQSKVITQKTGVPNNFLTNVTVKSDGT
KKFNLSNDTIQCIFKTYPAVRQKHIEYVPHQLTESEFWQKFLESHYFHKDRITTGSTKDL
FNDCAKLDDNLFKNEIKDLSKNNTDCYVGSIEDDGSDDNINSISEEKSSMANIVHENIIK
RFNQHSMMVLKTCEKSNLNSIPNGNDLKVPSNSSHINGTPDTALKRLRIQEKNDFVDLNP
ETETLDINQKKLKLSRVESYVNCLTREHKHDNTASKLSKAREVQKSIIYDVYEWSKSTSN
QVIEPSAAVNTLGLLTPGGSLMKGISDESASLAQLVPVTVEKDLRQLYVSLGELLRHFWS
CFPVTTPTLEEKLLKTHDSLQKFQNAKIKPFEDQIIINHGQLNQLTNHLNLMLHTAYNKF
SVWHSRRKIPNIL
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtcagaagatgtgctccttcaagtggggccagtacggcataagaagggcgat
gggacattgtatgttatgagccaacatgttgcatttattctcaattctagcgatactgtt
gctattagccaccattatagagatattaaaatgcaaaaaatatcatcagagttcaaaaac
aaagttcaattacagttggtgtttcatgatgaaacaatttcactatttcaatttactaac
tctgagaggagtgaagctatgcgagatagaaatcgagttaaagacttaatacaacaatta
ctgccaaaatatcaaaaacaagcaaataaagaatttggtgaaaaaagccgtattcttggt
gaaaatcgtatgctctttcaactttatcaagacctagtcattacccatgtcataacatcc
gaagaattttggtcacaacatgtcccttaccatttagctactcaatccaaagtaattact
caaaaaacgggtgtacctaacaattttcttaccaatgttacggtcaaaagtgatggtaca
aaaaaattcaatttatccaatgataccattcaatgtatctttaaaacatatccagcagtt
cgacaaaaacatatagagtatgtacctcatcaattaactgaatcagaattttggcaaaag
ttcctagagtcacattattttcataaagaccgcattactacaggaagtacaaaagattta
tttaatgactgtgccaaattggacgataatttatttaaaaatgaaattaaagatttatct
aaaaataatacagattgttatgttgggtcaattgaagatgatggatctgatgataatata
aattctatatctgaagaaaaatcttcaatggccaatattgtacacgaaaatattattaaa
cgttttaatcaacattcaatgatggttcttaaaacatgtgaaaaatctaatttaaattct
atacctaatggaaatgatttaaaagtcccatctaattcatctcatataaatggcacacca
gatactgcattaaagagattgagaattcaagaaaaaaatgattttgtagatcttaatcca
gaaacagaaactttggatattaatcaaaagaaattaaaattatctagagtagaaagttat
gtaaattgtctaacaagagaacataagcatgataatactgcatccaaactttctaaagca
agggaagtgcagaagagtattatttatgatgtttatgaatggagcaagtcaacttcaaat
caagttattgaacctagtgcagctgttaacactcttggtttacttacaccaggaggaagt
ttaatgaagggaatcagtgatgaatctgcttcattagcgcagttggtaccagttacagtt
gaaaaagatttgcggcagttgtatgtttctttaggagaattattaagacatttttggtca
tgttttcctgtaacaacacctacgttagaagaaaaactattaaaaactcatgattcctta
caaaaatttcaaaatgctaaaatcaagccttttgaagaccaaataattataaatcatggt
caattaaatcaactcacaaatcatttaaatttaatgttacatactgcctacaataaattt
tctgtttggcattctagacgaaaaatacctaatattctttga
DBGET
integrated database retrieval system
