Cupriavidus metallidurans: Rmet_0054
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Entry
Rmet_0054 CDS
T00351
Symbol
mrdA
Name
(GenBank) transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme00550
Peptidoglycan biosynthesis
rme01100
Metabolic pathways
rme01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rmet_0054 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Rmet_0054 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rme01011
]
Rmet_0054 (mrdA)
Enzymes [BR:
rme01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Rmet_0054 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
rme01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
Rmet_0054 (mrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
bDLD3
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
ABF06940
UniProt:
Q1LSD6
LinkDB
All DBs
Position
61236..63617
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AA seq
793 aa
AA seq
DB search
MTEIRNVELEIGRFRIRVAAAALFTVVCFGLLFSRFLWLQWYKHDQYSAKAEDNRISVAP
IEPNRGIIMDRNGVVLARNYSAYTLEITPSKLTDTLDNTIEELATLVDIQPRDRRRFKRL
LEESRSFESLPIRSQLTDEEVARFSAQRFRFPGVDVRARLFRQYPLGEAASHVVGYLGRI
SQRDQERIEAMDEANDAADGDKYDPRKDADNYKGSNYIGKIGLEQSYETELHGLTGFEEV
EVSAGGRPIRTLSTSPATPGNNLILSLDIRLQQLAEQLFGDRRGALVAIEPETGDILAFV
SKPTFDPNLFVEGIDSKTWDELNNSPDKPLLNRPLRGTYPPGSTYKPFMALAALTTGKRT
AAWGMHDPGFFTLGNHTFRDDKPGGHGWVDMQASIVQSCDTYYYMLARDMGVNAIHDFMK
PLGFGQITGIDIEGENRGILPSTDWKRKAYRRPEQQKWYDGETISLGIGQGYNSFTILQL
ANAVSILVNNGVAMKPHLVKAVEDSVSRKRTLTVPKESYRIPLKQGDIDVIKRSMVAVTH
SGTAARVFAGAAYESAGKTGTAQTYTLGKNEKYNHHALDERKRDHSLYTAFAPADHPKIA
LALIVENAGFGAAVAAPIARKVMDYYLLGKWPEELAATAPPPAERERAGGKPPVDTPSVF
TTGQTANAASATVMQTAPAAASDATTGAANAAGASAAGASASVPAARSASDTIAGQLDPD
AIAPASAEVTLDARMLQALGHSKPAPTPPATPSRATPASAPAPAKPKTQPARPKPANVAG
PASGSSARNNVSE
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaattcgcaacgtcgaactggaaatcggccgcttccgcatccgcgtggcggcc
gccgccctgttcacggtcgtctgctttggcctgctgttctcccgctttctgtggctgcag
tggtacaagcacgaccagtactcggccaaggccgaggacaaccgcatctccgtggcgccg
atcgagcctaaccgcggcatcatcatggaccgcaacggcgtggtgctggcgcgcaactac
tccgcgtacacgcttgaaatcacgccgtccaagctgaccgacacgctcgacaacacgatc
gaggagctggccacgctcgtcgatatccaaccgcgcgaccgtcgccgcttcaagcggctg
ctggaggaatcgcgcagcttcgaaagcctgccgatacgcagccagctcaccgacgaggag
gtagcccggttttcggcgcagcgcttccgctttccgggcgtcgacgtgcgcgcgcggttg
ttccgccagtatccgctgggcgaagcggccagccacgtggtcggctacctgggtcgcatc
tcgcagcgtgaccaggagcggatcgaggccatggacgaggccaacgacgccgccgatggc
gacaagtacgatccgcgcaaggacgccgacaactacaagggctccaactacatcggcaag
atcgggctggaacagagctacgagaccgagctgcacggcctgacgggcttcgaggaggtg
gaggtcagcgcaggtgggcggccgattcgcaccctgtccacgtcgccggccacgccgggc
aacaacctgatcctgtcgctcgacatccgcctgcagcaactggccgagcagctgttcggc
gatcgccgtggagcgctggtggcgatcgagcccgaaacgggcgacatcctggccttcgtg
tccaagccgaccttcgatccgaacctgttcgtcgaaggcatcgactccaagacctgggac
gaactgaacaactcacccgacaagccgctgctgaaccgaccgttgcgcggcacctatccg
cctggctcgacgtacaagccgttcatggcgctggctgcgctgaccacgggcaagcgcact
gccgcctgggggatgcacgatccagggttcttcacgcttggcaaccacacgttccgcgac
gacaagcccggcggccacggctgggtggacatgcaggcgtcgatcgtgcagtcgtgcgac
acctattactacatgctggcgcgtgacatgggcgtcaacgcgatccacgatttcatgaag
ccgctcggcttcggccagatcaccggcatcgatatcgagggcgaaaaccgcggcatcctg
ccatccacggactggaagcgaaaggcgtaccgccgccccgagcagcagaagtggtatgac
ggcgaaaccatttcgctgggcatcgggcagggctacaacagcttcacgatcctgcagttg
gccaacgcggtgtcgatcctggtcaacaacggcgtggcgatgaagccccacctggtcaag
gccgtggaggattcggtctcgcgcaagcgcacgctgaccgtgcccaaggaaagctatcgc
atcccgctcaagcagggcgatatcgacgtgatcaagcgttcgatggttgccgtgacgcac
tccggtaccgctgcacgggtgttcgccggcgctgcctacgagtcggccggcaagaccggt
acggcgcagacctacacgctgggcaagaacgagaagtacaaccaccatgcgctggacgag
cgcaagcgcgaccactcgctctacaccgcgttcgccccggccgatcatccgaagatcgcg
ctggcgctgatcgtcgagaacgcgggttttggcgccgccgtggccgcgccgatcgcgcgc
aaggtgatggactactacctgctgggcaagtggccggaggaactggccgcgacggccccg
ccgcccgcggagcgcgagcgcgctggcggcaagccgcctgtcgacacgccgagcgtgttc
acgactggccagaccgccaatgccgccagtgccacggtgatgcagacagcaccggccgcc
gcgtcggatgccacgacgggcgctgcaaatgccgcaggcgcgagcgcggcgggggcttcc
gcatcggtgccggcggcacggtcggcatccgacacgattgccggccagctcgacccggat
gccatcgccccggcctcggccgaagtgacgctcgatgcgcggatgctgcaggcgcttggc
cacagcaagccagcgccgacgccacccgccacgccgtcgcgcgcaacgcccgcctcggcc
ccggcacccgccaagccgaagacgcagcccgcccggccaaagcccgccaatgtcgcgggc
ccggcctcgggctcgtcggcccgcaacaacgtttcagagtaa
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