Cupriavidus metallidurans: Rmet_0456
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Entry
Rmet_0456 CDS
T00351
Symbol
rhlE1
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmet_0456 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rme03019
]
Rmet_0456 (rhlE1)
Enzymes [BR:
rme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rmet_0456 (rhlE1)
Messenger RNA biogenesis [BR:
rme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmet_0456 (rhlE1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ABF07342
UniProt:
Q1LR84
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All DBs
Position
484218..485840
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AA seq
540 aa
AA seq
DB search
MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV
GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV
LNVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKR
ELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFKA
GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE
HGLLRDIERLIKRQIEQVLLPGFEVDPSIKAEPIQKGRQQQRGGQPRGNGQGNAGNGGER
RQPRAAQGERQEAPRQPRPAQPARGEARNGNAGGSGNAPRTGQGGGRGNGHANSTAKGTA
KGTAKGNAQGNAQGNANARGANPRPQQARPAQDNTAAPPARNRRPAPQAALLGGGRKPAH
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttccgaactcggcttgtccgacaagctggtgcgtgccgtggccgaacagggc
tacaccacgccgaccccgattcaggcgcaagccattcccgcaattctcaaaggtggcgat
cttcttgccggtgcgcaaaccggcaccggcaagacggcaggtttcacgctgccgatgctg
caattgctctccgaaaccgccgcgcgcgccaatggcggcaatgcgccccgcggcgcgcgc
ccgaacgtgcgtgcgctggtgctgacgcccacgcgtgaactggccgcgcaggtcgaagag
agcgtgcgcaactatggcaagtatctgaagctgcgttcgatggtgatgttcggcggcgtc
ggcatcaatccgcagatcgaggcgctcaggcgcggtgtcgatatcgtggtggccacgcct
ggccgtctgctggaccacgtggcgcagcgcacgatcgacctctcgcacgttgaactgctg
gtgctcgatgaagccgaccgcatgctcgacatgggcttcatccacgatatccgcaaggtc
ctgaacgttctgccgcccaagcgccagaatctacttttctcggccacgttctcggacgat
atccgcgcgctggccgatcgcctgctggacaacccggcgtcgatcgaagtggcacgccgc
aataccacggcggaaaccgtggcgcagcgcgtgttcccggtcgaccgggaacgcaagcgc
gaactgctggcccatctggtgcgccagcacgactggcatcaggtgctggtgttcacgcgc
accaagcatggcgccaaccggctggccgaacaattgaccaaggacggcctctcagcgctg
gcgatccacggcaacaagagccagtcggcccgcacgcgcgcgctgaccgagttcaaggcc
ggcacgctgcgcctgctggtggccaccgacatcgccgcacgtggcatcgacatcgaccag
ctcccgcacgtggtcaacttcgatctgcccaacgtgcccgaggactacgtgcaccgtatc
ggccgtactggccgtgccggcgccgaaggcgaggcgatctcgctggtttgcgtggacgaa
catggcctgttgcgcgatatcgagcgcctgatcaagcgccagatcgagcaggtgctgctg
cccggtttcgaagtcgatccgagcatcaaggccgagccgatccagaagggccggcagcag
cagcgtggcggtcagccgcgcggcaacggccaggggaatgccggcaacggtggcgagcgc
cgccagccgcgcgccgcgcaaggcgagcgtcaggaagcgccgcgccaaccgcgtccggca
cagccggcgcgtggcgaggcccgtaacggcaacgccggaggcagtggtaatgcgccgcgt
accgggcagggaggtgggcgcggcaacggccacgccaatagcaccgccaagggcacggcc
aagggcacggccaagggcaatgcgcagggcaatgcgcagggcaatgcgaacgccaggggt
gcgaacccgcgtccgcagcaagcgcgtccggctcaggacaacactgccgcgccgcccgct
cgcaatcgtcggccggccccgcaggcggccctgctcggcggtggccgcaagcccgcccac
tga
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