Cupriavidus metallidurans: Rmet_0508
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Entry
Rmet_0508 CDS
T00351
Symbol
dacB
Name
(GenBank) D-Alanyl-D-alanine carboxypeptidase, S13 family
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
rme
Cupriavidus metallidurans
Pathway
rme00550
Peptidoglycan biosynthesis
rme01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Rmet_0508 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rme01002
]
Rmet_0508 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rme01011
]
Rmet_0508 (dacB)
Enzymes [BR:
rme01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Rmet_0508 (dacB)
Peptidases and inhibitors [BR:
rme01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
Rmet_0508 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
rme01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
Rmet_0508 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Peptidase_S11
Motif
Other DBs
NCBI-ProteinID:
ABF07394
UniProt:
Q1LR32
LinkDB
All DBs
Position
complement(538842..540398)
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AA seq
518 aa
AA seq
DB search
MSAMPIRPSLLRRSLSPVIATAALLAFGLTGAQAKPVKSVKATKPSVQRVSAEAADPAAA
RTGLPATVTTALRRAHVPLSAASFYVIKVGAPRPRVSWNAEAPMNPASTMKLVTTFAGLQ
LLGPDYRWLTSLYADGQPGPDGVINGNVYLRGRGDPKLVPEEMAKLVNTARSTGATAING
DLVLDRSFFADTQDNSYTIDGETQRAYNVNPDALLYAFKTLTFTITPDAAGRAVDVAVTP
ALAQLRVDNRLTLVNGRCGDWRARANPSITPQSDGTIVAAFDGNYSADCGEHVVNLATLS
HSDFIWGGFVAEWQAAGGRFVRPPGLRGGTVPRGAFLLARHYGQPLGEIVRDINKFSNNV
MARQLFLTIGAEIDRSGPASTEKSTRVIKRWLSRQGLDMPDLVLENGSGLSREERISAYD
MARLLQQALASNVGPVLMDSLPILGVDGTLRNRLTRANAAGNAYLKTGTLQDVRALAGYV
DALDGQRYVVVAYINHPNASGAQEAHDALMQWVYKGTP
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccatgccaatccgcccctccctgctccgccgcagcctgtctcccgttatcgca
acggccgcgctgctcgccttcggcctgactggagcccaggccaaacccgtcaaatccgtc
aaagccaccaaaccgtcggtccagcgcgtcagtgcagaagccgcggacccggccgccgcg
cgcaccggcctgcccgctactgtcaccacggcgctgcgccgcgcgcatgtgccgctgtcg
gcagcaagcttctacgtgatcaaggtcggcgcgccgcgcccgcgtgtgagctggaacgcc
gaggcgccgatgaacccggcgtcgacgatgaagctggtcaccacgttcgccggcctgcaa
ttgctcgggcccgactatcgctggctcacttcgctctacgccgatggccagccgggtccg
gacggggtgatcaacggcaacgtctatctgcgcggccggggagacccgaagctggtgccc
gaggagatggccaagctggtcaacacggcgcgatcgacaggcgcaacggccatcaacggc
gatctcgtgctcgaccgcagcttcttcgcggatacccaggacaacagctacacgatcgat
ggcgagacgcaacgcgcctacaacgtcaatcctgatgcgctgctttatgccttcaagacg
ctcaccttcacgatcacgcccgacgccgccggccgcgccgtcgacgtggccgtcacgccg
gcgctggcgcaattgcgtgtggataaccgcctgacgctggtcaacggccgttgcggtgac
tggcgcgcacgtgccaacccaagcatcacgccgcagtcagacggcaccatcgtcgccgcg
ttcgacggcaactactccgccgattgtggcgaacacgtggtcaacctggccacgctctcg
cacagcgatttcatctggggcggcttcgtggccgaatggcaggcggcgggtggccgcttc
gtgcgtccgcccgggctgcgtggcggcaccgtgccgcgcggcgcgttcctgctggcgcgg
cactacggccagccgctcggcgagatcgtgcgcgacatcaacaagttctcgaacaacgtg
atggcacgtcagctcttcctgacgattggcgcggagatcgaccggagcggcccagccagc
accgagaagtcgacgcgcgtgatcaagcgctggctatcgcgccagggactggacatgccg
gatctggtactggaaaacggctcgggactgtcacgcgaggaacggatcagcgcttatgac
atggcgcgtctgctgcaacaggcactggccagcaatgttgggccggtgctgatggactcc
ctgccgatcctcggcgtggatggcaccctgcgcaatcgcctgacccgggccaatgcggcc
ggcaatgcctacctgaagacgggcacactgcaggacgtacgcgcgctggcgggctacgtc
gacgcgctcgacgggcagcgttatgtggtggtggcgtatatcaatcacccgaacgcatcg
ggagcgcaggaggcgcacgatgcgttgatgcagtgggtgtataagggcacgccttga
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