Cupriavidus metallidurans: Rmet_2440
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Entry
Rmet_2440 CDS
T00351
Symbol
rne
Name
(GenBank) fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmet_2440 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rme03019
]
Rmet_2440 (rne)
03009 Ribosome biogenesis [BR:
rme03009
]
Rmet_2440 (rne)
Enzymes [BR:
rme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Rmet_2440 (rne)
Messenger RNA biogenesis [BR:
rme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rmet_2440 (rne)
Ribosome biogenesis [BR:
rme03009
]
Prokaryotic type
rRNA processing factors
Rmet_2440 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABF09317
UniProt:
Q1LKK9
LinkDB
All DBs
Position
2648903..2652016
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AA seq
1037 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAFFKDGVDVRNARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRAAEELQ
WDLNYLLQLWKAIDGAAGDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
AFMSVVMPDNMSRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESGKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRQEINLIELRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLEESTASYRMAEAAAKELEADTSYSSRKKEETRPRQEAAVKGITPDAP
APVSVPRPERVRPEAPAARPAPATQPVASGGFIAWLKGLFGAKPATPPEAPAKPAAETPS
RGGEGRRERGQRGEGRGEGREGREGREGREGRGQRGERGEQRGDRQGRGQRGERSEQQRG
EQREQREPREQRGERPARAPREGQATPAIAQPERAEARQEGRRERSQERRERQRERQRER
NEARETDEALSTEAPQLAVGAAQVAPVAAAAAAAAAAAMVAVTTEADTTELPAGVEGAET
GEGEERRRRNRRGRNRYRRDRDDTAQNAEGIDGDEANLAEVSAGVTESESESTGFQPAVA
EADESVKAVETAVAVTPAEVAPAAPVAPVAPVASEPVFAAVAEPQAAPVVTPAPVETAPV
VAAPVAAAPVISEPVIATPDVAPAPVAAPVAAPVAAPVAAPVAAVVETVAVVSAATQVTA
APSAENLEPMLAAAGLEWVRTDGDKHRAAQEAASQIVPAPRVPRERKPLPPLPEGPMVLV
ETGGVQQAAAQQQQQQQ
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaacgcgacgcaacaggaagaactgcgcgtcgccatcgtcgat
ggtcagaaactgatcgacatcgacatcgaaactgccgggcgcgaacagcgcaaaggcaac
atctacaagggtgtcatcacccggatcgaaccctcgctggaagcgtgcttcgtcaactac
ggcgaagagcgccatggcttcctgccgttcaaggaagtggcgcgcgccttcttcaaggac
ggcgtggacgtgcgcaacgcgcgcatccaggacgccctgcacgaaggccaggaactgatc
gtccaggttgagaaggaagagcgcggcaacaagggcgcagccctgaccacgttcatctcg
cttgccggccgctacctggtgctgatgccgaacaacccgcgcggtggtggcgtttcgcgc
cgcatcgagggcgaagaccgccaggaactgcgcgagacgatggcgcagctccaggtgccg
gaaggcatgagcatcatcgcgcgcaccgccggtatcggccgtgccgccgaagaactgcag
tgggacctgaactacctgttgcagctgtggaaggccatcgacggcgccgccggcgacaac
aaggccccgctgctgatctatctggaatccagcctcgtgatccgcgcgatccgcgactac
ttccagcccgatatcggcgaaatcctgatcgataccgacgagatttatgagcaggcccgc
gccttcatgagcgtggtcatgccggacaacatgagtcgcgtgaagaagtaccgcgacgac
gtgccgctcttctcgcgcttccagatcgagcaccagatcgaatcggcctactcccgcatg
gtgatgctgccgtcgggtggtgccatcgtgatcgaccacaccgaagccctcgtttccgtc
gacgtgaactcggcccgcgccaccaagggtgcggacatcgaggaaaccgcgctgcgcacc
aacctggaagcggccgacgaaatcgcccgccagctgcgcctgcgcgaccttggcggcctg
atcgtgatcgacttcatcgacatggagtccggcaaggcccagaaggatgtggaaacgcgc
ctgaaggatgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagtcgtttc
ggcctgatggagctgtcgcgccagcgcctgcgtccgtccctgtccgaaggctcgcatatc
acctgcccgcgctgcaacggcacgggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacacggccgccatccactgccag
gtgccggtggaagtggccgctttcctgctgaacgaaaagcgtcaggaaatcaacctgatc
gagttgcgcttcaaggtcaacgtgctgctgatcccgaacaagcacctcgaaacgccgcat
tacaagctcgagcgcctgcgccacgacgatccgcgcctggaagaatcgaccgccagctac
cgcatggccgaggctgccgccaaggaactcgaggccgacacgagctacagcagccgcaag
aaggaagaaacgcgtccgcgtcaggaagcggccgtcaagggcatcacgcccgacgcgccg
gctccggtttcggtgccgcgccctgagcgcgtgcgcccggaggcgcctgcggcgcgcccc
gcaccggcaacccagccggtggccagcggcggtttcattgcctggctcaagggcctgttc
ggcgccaagccggccacgccgcccgaggcaccggcaaagccggcagccgaaaccccgtcg
cgcggtggtgaaggccgccgcgagcgcggtcaacgcggcgaaggccgtggtgaaggccgt
gagggacgcgaaggtcgtgaaggtcgcgagggccgtggccagcgcggcgagcgtggcgaa
cagcgcggtgaccgtcagggtcgtggccagcgtggtgaacgcagcgagcagcaacgcggc
gaacaacgtgagcagcgtgagccgcgtgagcaacgtggcgaacgccctgcacgcgcgcct
cgcgaaggccaggccaccccggcaatcgcccagccggaacgtgccgaggcacgccaggaa
ggccgccgcgagcgcagccaggaacgccgcgagcgtcagcgcgagcgtcaacgcgagcgc
aatgaggcccgcgagaccgatgaggcactgagcaccgaagcgccgcagttggccgtcggc
gccgcccaggtagcgccagtcgccgcagccgccgcagccgccgcagccgccgcaatggtc
gccgtgaccacggaagcagacaccacagaactgccggctggcgtggaaggtgccgagacc
ggtgaaggcgaagaacgccgtcgccgcaatcgtcgcggccgcaaccgctatcgccgcgac
cgtgatgacactgcgcaaaatgccgaaggtattgacggcgacgaagccaatctggccgaa
gtcagcgcaggcgtgacggaatcggaatctgagtcgactggcttccagcccgctgttgcc
gaggccgatgaaagcgtcaaggctgtcgaaacggccgtggcggtgacgccggcggaagtg
gccccagcagcaccggtcgctccggtagccccggtggcatccgagcccgtcttcgcagcc
gtggccgagccgcaagcggcgccggtagtgacgcccgctccggtcgagactgcgccggtg
gtagccgctcccgtggcagctgctccggtgatttcggaacctgtcatcgccacgccggac
gtcgcgccggccccggttgcagccccggttgcagccccggttgcagccccggttgcagcc
ccggttgcagccgtggtggaaaccgtggcagtcgtatcggccgcaacgcaggtgaccgcc
gcgccaagcgccgagaacctggagccgatgctggctgcggctggcctggagtgggtccgt
acggacggcgacaagcaccgcgccgcacaggaagccgcttcgcagatcgtgccggcaccg
cgcgtgccgcgtgagcgcaagccgctaccgccgctgccggaaggcccgatggttctggtc
gagaccggtggcgtacagcaagccgctgcacagcaacagcagcaacagcagtaa
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