Cupriavidus metallidurans: Rmet_2582
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Entry
Rmet_2582 CDS
T00351
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmet_2582 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rme03019
]
Rmet_2582 (rhlE)
Enzymes [BR:
rme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rmet_2582 (rhlE)
Messenger RNA biogenesis [BR:
rme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmet_2582 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
AAA_22
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ABF09459
UniProt:
Q1LK67
LinkDB
All DBs
Position
complement(2806056..2807726)
Genome browser
AA seq
556 aa
AA seq
DB search
MLLTSQAPILASVRDDRARAVMVESKSLIFRAIHPLSGLSSRRVSDCDGFAPCTDTSTMT
MTTTQDQAPAAEQTFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTG
TGKTAGFALPIIQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRS
TVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGF
LPDLQRIINLLPAQRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQ
VQDGHKQAAVVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQT
ERMQTLDGFKNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGAS
GDALSIFVPGNDDRLLADIEKLIKRSIPRGSLDGFDPTGERARQEDSDRRRARTEVRRVR
DNGEGEEQQRRRRTEPNGRQAFRPSDDPFFSRPYEPSGSYTPAPKTEEQLAAALTRGRQA
PKRPVAALLGGVPRKS
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgacatcgcaggcgccgatactggctagcgtccgggatgaccgcgcccgggca
gtaatggtagaatccaagtctttgattttccgggcaattcaccctttgtccggtctcagt
tccagacgcgtgtccgattgcgacggcttcgcgccctgcacagacacctcaaccatgacg
atgacaaccacacaagaccaggccccagcagcagagcagacgttcgaaagcttcgggctg
gatccgcgcattctgcgcgccttgaccgaacagggttacaccaagccgacgccgattcag
gcgcaggcgattcccgtggtgttgctgggcaaggatgtgatgggcgccgcgcagacgggc
accggcaagaccgctggtttcgcgctaccgatcattcagcgtctgctgccgctcgccaac
gcgagtgcctctccggcgcgtcacccggtgcgcgcgctgatgctgacgccgacgcgcgaa
ctggccgatcaggtctacgacaacgtcgcccggtatgccaagcacactgatctgcgcagc
acggtggtcttcggtggcgtcgacatgaacccgcagaccgatgcgctgcgccgtggcgtg
gaaatcctcgtggccacgccgggccgtctgctcgatcacgtgcagcagaagtcggtgaac
ctgtcgcaggtgcagatgctggtgctcgacgaagccgaccgcatgctcgacatgggcttc
ctgcccgacctgcagcgcatcattaacctgctgccggcgcagcgccagacgctgctgttc
tcggccacgttctcgcccgaaatcaagaagctggcctccagctacctgaagcagccggtg
acgatcgaagtggcgcgcagcaactcgaccaacgagaacgtgcgtcaggtggtgtatcag
gtgcaggatggccacaagcaggccgccgtggtgcatctgctcaagcagcgcgccaacgaa
caacagtcgcgccagtgcatcgttttcgtcaatagcaagattggttgctcgcgtctggcg
cgtcatctggagcgcgagggcatcaacgccgccgcgattcacggcgacaagacgcagacc
gagcgtatgcagacgctcgacggtttcaagaatggcacgatcgacgcgctggtggccacc
gatgtggcggcccgtggtttggacattcccgccatgccctgcgtgatcaacttcgacctg
ccgttcagtgccgaagactacgtgcaccgcatcggccgcacaggccgtgctggcgccagc
ggcgacgcgctttcgatcttcgtgccgggcaatgacgaccgtctgctggccgacatcgag
aagctgatcaagcgcagcattccacgcggctcgctggacggcttcgatccgaccggcgag
cgtgcgcgtcaggaagacagcgatcgtcgccgcgcgcgtacggaagttcgccgcgttcgc
gacaatggcgagggcgaggagcagcagcgccgccgccgtaccgagccgaatggtcgccag
gcgttccgtccgtcggacgatccgttcttctcgcgtccgtacgagccgtcgggcagctac
acgccggcaccgaagaccgaggaacaactggccgccgcgctgacgcgtggacgtcaggcg
cccaagcgccccgtggccgcgctgctcggcggcgtgccgcgcaagtcctga
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