Cupriavidus metallidurans: Rmet_2624
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Entry
Rmet_2624 CDS
T00351
Symbol
polA
Name
(GenBank) fused DNA polymerase I 5'->3' exonuclease; 3'->5' polymerase; 3'->5' exonuclease
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03030
DNA replication
rme03410
Base excision repair
rme03420
Nucleotide excision repair
rme03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rmet_2624 (polA)
03410 Base excision repair
Rmet_2624 (polA)
03420 Nucleotide excision repair
Rmet_2624 (polA)
03440 Homologous recombination
Rmet_2624 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rme03032
]
Rmet_2624 (polA)
03400 DNA repair and recombination proteins [BR:
rme03400
]
Rmet_2624 (polA)
Enzymes [BR:
rme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rmet_2624 (polA)
DNA replication proteins [BR:
rme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rmet_2624 (polA)
DNA repair and recombination proteins [BR:
rme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rmet_2624 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmet_2624 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABF09501
UniProt:
Q1LK25
LinkDB
All DBs
Position
complement(2855702..2858506)
Genome browser
AA seq
934 aa
AA seq
DB search
MSDSPKTLLLVDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAQYIACV
FDAKGKTFRDDMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTL
ALQASQQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLS
LIGDAVDNVPGVPKVGPKTAVKWLTEYGTLDDIMGNAEKIKGVVGENLRNTLEWLPRARE
LVTVKTDCDLSGAVADFQALHDLGEDKEKLIAFFQRYGFKSWLREATGESLPNARAAARA
VPKAAPAQGGLFDAPAQADAPAEDVPPAEIRYETVTTEAALDEWLRKIADAPIVAIDTET
TSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLERMRGWLEDPA
RPKLGQHLKYDSHVFANHGVALRGIAHDTMLESYVLASYRNHGMDSLAERLLSLKTITYE
EVCGKGANQIGFDQIDLPRATEYAAEDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVS
VVLQKIERNGVLIDADRLAAQSAELGLRMMDLERAAHDAAGQPFNLGSPKQIGEILFNQM
KLPVVKKTASGAPSTDEEVLQKLADDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGR
VHTSYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAAPGNVIVSADYSQIELRIM
AHISGDENLLRAFANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLA
SNLGIEREAAKHYIDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGP
RRQAAERAAINAPMQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELE
LVRVKLPELMCAVATLNVPLVAEVGSGANWEEAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatagtccaaaaacactcttgctcgtcgatggatcgagctatctatatcgcgcg
tatcacgctctgccggacctgaggaatggcgaaggtctgcccacgggggcaatctacggc
atgatcaatatgctgcgcaagctgcgcaatgattacccggcacagtatatcgcctgtgtg
ttcgacgccaagggcaagacgttccgggatgacatgtatccggcatacaaggagcatcgc
ccgtcgatgcccgaggacctcgcgaagcagatcgagccgatccacgaggccgtgcgcgcg
cttggctggccgatcgtggtcgtggaaggcgtggaggccgacgacgtgatcggcacgctc
gcgctccaggcgtcgcagcagggcgtgaacacggtcgtttctacgggcgacaaggatctt
gcgcagctcgtcaatgacaccgtcacgttggtcaacaccatgagcggcgaggttctcgac
ccgccgggcgtggtggcgaagtttggcgtgccgcccgagcgcatcgtcgactacctgtcg
ctgatcggtgacgccgtggacaacgtgcccggcgtgccgaaggtcggtccgaagaccgcg
gtcaaatggctgaccgaatacggcacgctggacgacatcatgggtaacgccgagaagatc
aagggcgtggtaggcgagaatctgcgcaacacgctcgaatggctcccgcgcgcgcgggaa
ctggtcacggtcaagaccgattgcgacctgagcggtgccgttgccgatttccaggcgctg
cacgaccttggcgaagacaaggaaaagctgatcgcgttcttccagcgctacggattcaag
tcgtggctgcgcgaggcaaccggtgagtcgctgccgaacgcacgcgcggcagcgcgcgcg
gtgccgaaggccgcgccggcgcagggtgggctgttcgatgcgccggcgcaagccgacgcc
ccagccgaagatgtgcccccggccgagatccgctacgagaccgtgaccaccgaggccgcg
ctcgatgaatggctgcgcaagatcgccgatgcgccgatcgtcgccatcgataccgaaacg
acctcgctcgatccgatgctggcgcagctcgtcggcatctcgctgtccgtcgagccgggc
gcggctgcctatattcccgtggcgcatcgcggcccggacgtcgcgggtctcgagaaccat
ggccagctctcgcgcgagtacgtgctcgagcgtatgcgcggatggctcgaggatccggcg
cgtccgaagctcggtcagcacctgaagtacgactcgcacgtgtttgccaaccacggcgta
gcgctgcgcggcatcgcgcatgacacgatgctggaaagctatgtgctggcttcgtaccgc
aatcacggcatggacagcctggccgagcgcttgctgagcctgaagacgatcacgtacgag
gaagtttgtggcaagggcgcgaaccagatcggcttcgaccagatcgacctgccgcgcgcc
accgaatatgcggccgaggatgccgacgtgacactgcgcctgcatcgcaagatgcagccg
cagctcgaggcatcggaagggctgaagtacgtctacgaacagattgagatcccggtctcg
gtggtgctgcagaagatcgagcgcaacggcgtgctgatcgatgccgaccgcctggccgcg
cagagcgccgagctgggtctacgcatgatggacctcgagcgtgccgcgcacgatgcggcg
ggccagccgttcaatctcggatcgccgaagcagatcggcgagatcctgttcaaccagatg
aagctgccggtggtcaagaagaccgccagcggcgcgccgtcgaccgatgaagaggtgctg
cagaagctggcggacgactatccgctgcccaagctgctgctggactaccggggcctgtcg
aagctgaagtccacctacacggacaagctgccgaagatggtcaacccgaataccgggcgc
gtgcatacgagctacgggcaggccactgcggtgacgggtcgcctcgcatcgaccgatccg
aacctgcagaacattccggtgcgcaccgaggaaggtcgccgcattcgcgaggcgttcatc
gccgcgcccggcaacgtgatcgtctcggccgactattcgcagatcgaactgcgcatcatg
gcgcatatctcgggcgacgagaacctgctgcgcgcgttcgccaatggcgaggatattcac
cgtgccacggctggcgaaatctttggcgtcgagcgcgaggccgtcagcagcgagcagcgc
cgctatgcgaaggtgatcaacttcggtctgatctatggcatgagcgcgttcggcctggcc
agcaaccttggcatcgagcgcgaggcggccaagcactatatcgaccgctacttcatgcgt
taccccggcgtggcgcactacatggagcagacgcgccagacggcgcgcgagcagggctat
gtcgagactgtgttcggccgccgcctctggctgccggacatcaacggcggcaatggcccg
cgccgtcaggccgcagaacgcgcggccatcaacgcgccgatgcagggcaccgcggccgat
ctgatcaagctgtcgatgatcgccgtgcaggactggctcgaaggcgagcgtctcggcacg
cgccagatcatgcaggtgcatgatgaactggtgctcgaagtgccgcaggccgaactcgaa
cttgtccgcgtgaagctgcccgagctgatgtgcgcggtggccaccctcaatgtgccgctg
gttgccgaagtgggtagtggcgcgaactgggaagaggcccactga
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