Cupriavidus metallidurans: Rmet_3056
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Entry
Rmet_3056 CDS
T00351
Name
(GenBank) Exoribonuclease II (RNB)-family protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rme
Cupriavidus metallidurans
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rme03016
]
Rmet_3056
Enzymes [BR:
rme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rmet_3056
Transfer RNA biogenesis [BR:
rme03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rmet_3056
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
SH3_YKFC_2nd
Motif
Other DBs
NCBI-ProteinID:
ABF09928
UniProt:
Q1LIU8
LinkDB
All DBs
Position
complement(3312781..3314919)
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AA seq
712 aa
AA seq
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MQLLFEEGGEIRAGTVLAQQGEAYQVELPAGKRTKVKAKDVLLQFAQPSAMEMVRQTGEM
TAEIDLDFLWECAPAEEFGFAELAAEYYGADAGPVQQAALAMALHGNPIYFRRKGRGRYM
RAPEDQLKAALAAVERKKQQALVQGEYEEQLKALTLPEAFRGKALQLLFKPDKNSLEYKA
MDAACTALGMTPMRLMVAVGGVESPRALHEAKFLADCFPKGTGFPDVDVPEPPADLPVAD
VQAFSIDDVTTTEIDDALSVTRLGDGKLRVGIHIAAPGLGIRRSEPLDAIARHRLSTVYF
PGDKITMLPDSVVDRYTLQEGRTCPALSLYVTIDPNGVDGLTIVGSETRAEQVPIAANLR
HNLLDDIVTEAALAAGTGDYPFRDELTELYRLANHLHDERQRARLASGLRPEAHNRADFN
FYIDQIEGGGERVRIEQRRRGSPLDQIVAELMILANSTWGKLLADHGVPGIYRTQKAWGM
HRTRMQTYPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQIMAVAQHGVTAKLVAPFKPKDA
DLLAAVADFEGTYAAYADHQSTMERYWCLRWLKQENRDRMMATVLKDGAVRFTDIPLVTR
VPELMQAVRGTQVLLEIATTDEISLEVSCRVLEVFAGEGAMPDEDLDADEELDEASAEAA
ADAAAEAAAEDAVEGAAEGADAAPEDADSEASEGDQDDEASAPRDTGANPAA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgctgttcgaagaaggcggcgaaatccgcgccggcaccgtgctcgcccagcag
ggcgaggcctaccaggtcgagttgcctgcgggcaagcgcaccaaggtcaaggccaaggat
gtgctgctgcagttcgcccaaccgtcggcaatggagatggtgcggcagaccggcgaaatg
accgccgagatcgatctcgacttcctctgggaatgcgcgccggccgaggaattcggcttt
gccgaactggccgccgaatactatggcgccgacgcgggcccggtgcagcaggccgcgctg
gcgatggcgctgcatggcaatccgatctatttccgccgcaagggacggggccgctacatg
cgcgcgccggaagaccagctcaaggccgcgctggccgcggtggagcgcaagaagcagcag
gcgctggtgcagggcgagtacgaggagcaactcaaggcgctgactctgcccgaagcgttc
cgcggcaaggcgctgcaactgctgttcaagcctgacaagaacagtctcgaatacaaggcc
atggatgccgcctgcaccgcgctcggcatgacgccgatgcggctgatggtggctgttggc
ggcgtggaaagcccgcgcgcgctgcacgaggccaagttcctggccgattgtttcccgaag
ggcaccggtttcccggacgtcgatgtgccggagccgcccgccgacctgcccgtggccgat
gtgcaggcgttctcgatcgacgacgttacgacgaccgagatcgacgatgcgctgtccgtg
acgcgtctgggcgacggcaagctgcgcgtggggatccatatcgctgcgccggggctcggc
atccgccgcagcgagccgctcgacgccatcgcgcgccatcgactgtccacggtctacttc
cccggcgacaagatcacgatgctgcccgacagcgtagtggaccgctacacgctgcaggaa
ggccgcacctgcccggcgctgtcgctttacgtgacgatcgacccgaacggcgtggatggc
ctgacaatcgtcggcagcgagacgcgcgccgagcaggtgccgattgccgcgaacctgcgg
cacaacctgctcgacgacatcgtgacggaagccgcgctggccgcgggcacgggcgactat
ccgttccgcgatgaactgaccgagctgtaccggctggccaaccacctgcacgacgagcgt
cagcgcgcgcgtcttgccagcggcctgcgcccggaggcgcacaaccgcgccgatttcaat
ttctacatcgatcagatcgagggtggcggcgagcgcgtgcgtatcgagcagcgccgccgt
ggctcgccgctggaccagatcgtggccgagttgatgattctggccaacagcacgtggggc
aagttgctggcggaccacggcgtgccgggtatctaccgcacgcagaaggcgtgggggatg
caccgcacgcggatgcagacgtaccccgcgccgcacgagggcctgggcgtcgcgcagtat
gcgtggagtacgtcgccgctgcgccgctacgtcgacctggtcaatcaatggcagatcatg
gccgtggcccagcatggcgtgaccgccaagctcgttgcgccgttcaagcccaaggacgcc
gacctgctggcggccgtggccgacttcgaagggacctatgcggcctacgccgaccaccag
tcgaccatggagcgttactggtgcctgcgctggctcaagcaggagaatcgtgaccggatg
atggccacggtgctcaaggatggcgcggtgcgctttaccgacatcccgctggtcacccgt
gtgccggagttgatgcaggcggtgcgtggcacgcaggtgctgctggagatcgccacgacg
gacgagatctcgctcgaggtgtcgtgcagggtgctggaagtctttgctggcgagggcgcg
atgcccgatgaggatctcgacgccgacgaggaactggacgaggcttccgcggaagcggcc
gccgatgccgccgccgaggcagcggctgaagacgccgtggaaggcgcggcggaaggggcc
gatgctgcgccggaggacgccgattccgaggcttccgagggcgatcaggacgacgaggcg
tctgcgccacgcgacactggcgccaatccggctgcctga
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