Cupriavidus metallidurans: Rmet_3328
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Entry
Rmet_3328 CDS
T00351
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmet_3328 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rme03019
]
Rmet_3328 (recQ)
03400 DNA repair and recombination proteins [BR:
rme03400
]
Rmet_3328 (recQ)
Enzymes [BR:
rme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmet_3328 (recQ)
Messenger RNA biogenesis [BR:
rme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmet_3328 (recQ)
DNA repair and recombination proteins [BR:
rme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rmet_3328 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABF10200
UniProt:
Q1LI26
LinkDB
All DBs
Position
complement(3592027..3593919)
Genome browser
AA seq
630 aa
AA seq
DB search
MVWLRLSWLSESRCPMSRALAILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKS
LCYQIPALLRQQAGHGVGIVVSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERD
LLAGRLDILYVAPERLMTPRFLDLLERTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHE
RFPRVPRIALTATADALTRQEIVERLALDEASVFISSFDRPNIRYRIIEKDNARQQLLAF
IKAEHMNATGGHDSGIVYCLSRKKVEDTAAWLSSHGINALGYHAGMDSQIRQTHQARFRE
EEGIVMVATIAFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD
VVQQKRMIDESEADEAHKRVSSSKLDALLGLCETAGCRRVRILAYFDETAEPCGNCDTCL
EPPSTWDGTREAQMALSCVYRIAQASRVYFGATHLIDVLRGNANEKIRQWGHDKVSTFGI
GKDRSVSEWHAIFRQLIAHGLLVIDHGGHGALLLGDSARAVLKGEELITLRRQVSKPGKS
GDRGARGARIDHTATMDADMLANWEALRGWRTTTAREHGVPAYVIFHDATLAELARSAPE
SLDELAEVPGIGASKLERYGEEILEILRAV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
gtggtatggttacgcctttcctggctttccgaatcccgctgtcccatgtcgcgcgccctg
gcgatcctcaaagaagtcttcggctaccacgcattccgcggccggcagggcgagatcatc
gaccacgtggccgaaggcggtgattgcctggtgctgatgccgaccggtggcggcaagtcg
ctctgctaccagattcccgcgctgctccggcagcaggcaggccacggcgtgggtatcgtc
gtatcgccactgatcgcgctgatgcaggatcaggtcgccgcactgacggaggcgggggtt
cgcgccgcggtgctcaactcgacgctgagcagcagcgaggcatcggcagtcgagcgggac
ctgctggcggggcggctggatatcctctatgtggcgccggagcggctgatgacgccgcgg
ttcctcgatctgctcgagcggacacgcgtgggtctctttgcgattgacgaagcgcattgc
gtatcgcaatggggacatgacttccggcccgagtacatccagctgtcggtcctgcacgag
cgctttccgcgtgttccgcgtatcgccttgacggccacggccgatgcactgacgcgccag
gagattgtcgagcgtctggcgctggacgaggcgagcgtcttcatctcaagcttcgaccgc
cccaatatccgctatcggatcatcgaaaaggacaacgcccggcagcagttgctcgcgttc
atcaaggcagagcacatgaacgcgactggcgggcacgacagcggcattgtctactgcctg
tcgcgcaagaaggtcgaggataccgcagcgtggctgtccagccacggcatcaacgcgctg
ggctatcacgccggcatggactcccagattcgccagacgcaccaggcccgattccgcgag
gaagaagggatcgtgatggtagccaccatcgctttcggcatgggtatcgacaagccggac
gtacgctttgtggcgcacctggacctgcccaagagcatggaagggtactaccaggaaacc
ggacgcgcgggacgcgacggcctgcccgccaatgcatggatggcatacgggctgggcgac
gtggtgcagcagaaacgcatgatcgacgagtcggaagcggacgaggcgcacaagcgcgtc
tcgtcgtccaagctcgatgccttgctgggtttgtgtgaaaccgctggctgccggcgtgtg
cgcatcctggcgtatttcgacgagacggccgagccttgtggaaattgcgatacctgcctg
gagccaccttccacatgggatgggacacgcgaggcccagatggcgctgtcgtgtgtctac
cgtatcgcgcaggcgagccgcgtctattttggcgccacacatctgatcgacgtgctgcgt
ggcaatgccaacgagaagatccggcaatgggggcatgacaaggtgtcgacgttcggcatc
ggcaaggatcgctcggtatccgaatggcacgcgatcttccgtcagttgatcgcgcacggg
cttctggtcatcgatcacggtggacacggagcgttgctgctaggcgattcggcgcgtgcc
gtgctcaagggtgaggaattgatcaccctgcgccgccaggtcagcaagccgggcaagtcc
ggcgaccgtggcgcgcgcggggcgcggatcgaccatacggcgacgatggatgccgacatg
ctggccaactgggaagcgctgcgcggctggcggaccaccacggcgcgcgagcatggcgtg
cccgcctatgtgatcttccatgacgccacgctggcggaactggcgcgcagcgcacccgag
tcgctcgatgagctggcggaagtgcccggaatcggtgcgtcgaaactcgaacgctacggc
gaggaaatcctcgaaatcctgcgcgcggtctga
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