Cupriavidus metallidurans: Rmet_4661
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Entry
Rmet_4661 CDS
T00351
Symbol
rpoD2
Name
(GenBank) RNA polymerase sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
rme
Cupriavidus metallidurans
Pathway
rme02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rmet_4661 (rpoD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rme03021
]
Rmet_4661 (rpoD2)
Transcription machinery [BR:
rme03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rmet_4661 (rpoD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
ATG16
Motif
Other DBs
NCBI-ProteinID:
ABF11523
UniProt:
Q1LEA3
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All DBs
Position
megaplasmid:complement(1293476..1295329)
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AA seq
617 aa
AA seq
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MNNTHPESLVALVALGSERGFLTHGEISDALPDSDFGQIQRVLEELGVQIVERTLANEPI
RLEEHADALVVDEAVIEEAAAAVMQADGREARTTDPVQLYLREIGTIPLLTREDEVAIAR
RHEIAVTEMVAEMVSCPLVVYELLTMADEIERGEMAVDDLIDHWDEVPAAAVNVPAIEMS
EAVQDDDPAPGAAGVDLEETDPVSTGASTARSSAALESEVIARLAIVRARFLDWSRQSRQ
QAATSDAFVALNAIRAELAVYHFSAAAVARLGQVLSTHIAAIQQAERRIAGIVIDRCGIA
REQFLQTFPGHEIDLGWSEALAAERISGAADALVRAIPEIQAIQREMRVLENRAAMSLGD
LKNLGQRVAKARARAQAARDEMIRSNLRLVVSNAKKYLHRGMPLLDLIQEGNLGLMRAVD
RFDYRRGYKFSTYATWWIRQGITRAIADKGPTIRIPIHLVEVVGKVNRASRELFHETGEA
PAPEALAARLSLSVKKVKAILDLVKEPLSLEMSVGESGDALLWDTLTDECSASPDESAMR
VSLRKDLDEALATLKPREAKIVKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLERQALRK
LRNPDRAPRLQAHRDIH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaataacacccaccccgagtccttggtcgcgctggttgctttaggcagcgagcgggga
ttcctgacgcacggcgagatcagcgacgcccttcctgacagtgactttgggcagatccaa
cgcgtgttggaggagctgggcgtccagatcgttgaacggacgttggcgaacgaacccatc
agactggaggagcacgcggacgctctggtcgtggatgaggcggtcatcgaggaagcggca
gcggcagtcatgcaggccgatgggcgtgaggcacgaactaccgaccctgtgcaactgtat
ctgcgtgaaattgggacgattcctttgttgacgcgagaggacgaggtcgcgattgccagg
agacatgaaatcgcggtgaccgaaatggttgccgaaatggtctcgtgtccgctcgtggtt
tatgaactgctcacgatggcagacgaaatcgagcgaggcgagatggctgtcgacgacctt
atcgaccattgggatgaggtgcctgccgccgcagtcaatgtaccagctatcgagatgagt
gaggcggtccaggatgatgatccagcgcctggcgctgcgggtgtggacctcgaagagacg
gatccggtctccaccggcgcctcgacggcccgatcatcggccgcattggagagtgaggtg
atagcgcgacttgcgatcgttcgagcccggttccttgactggtcacgccaatccaggcag
caggcagccacatcggacgccttcgttgcattgaatgcgattcgggccgagttggcggtc
tatcacttcagtgccgctgcagtcgcccgtctcggccaggtgctgtccactcacatcgct
gcaattcaacaggccgaacgccgtatcgcggggatcgtcattgatagatgcggtatcgca
agagagcaattccttcagacgtttccggggcatgaaatcgatcttggctggtcggaggcg
ctggcggcagagcgcatcagtggtgctgcggacgcgcttgtgcgagccatcccggaaatt
caggcaattcagcgggaaatgagggtgcttgagaaccgcgcggccatgtcacttggcgat
ctgaaaaacctcggccagcgcgttgccaaagcacgcgcgagggctcaggccgccagggac
gaaatgatcaggtccaatctccgtctcgtcgtttcaaatgccaagaagtatcttcaccgc
gggatgcctctgctggatcttattcaggagggcaatctcgggctgatgcgagccgtagac
cgattcgattaccgccggggctacaagttctcgacctatgccacgtggtggattcgtcag
ggcattacccgcgctatcgcggacaaggggccgactatccggattccgattcatctggtg
gaggttgtgggaaaggtcaatcgtgcgtcacgggaactctttcatgaaacgggagaggcc
cctgcaccggaagctttggccgcgcgtctttccctttccgtaaaaaaggtcaaggcgatt
cttgatctggtcaaagaaccactgtcgctggaaatgtcggttggcgaaagcggagatgcc
ttgctatgggatacgctcaccgacgaatgttcagcttcaccggatgaatccgcaatgcgc
gtgtcgctcagaaaggatctggatgaggcgttggcaaccctgaaaccaagggaagcgaag
attgtaaagatgcggtacggcgttgatgccggcacagactacacactcgaagaaataggc
cagcagtatggtctttcgcgtgagcgagtccgccagctcgaacgtcaggccctgcgcaag
ctacgcaatcccgatcgcgcacctcgcttgcaggcgcatcgagatatccattag
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