Rossellomorea marisflavi: D5E69_00355
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Entry
D5E69_00355 CDS
T07410
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmf
Rossellomorea marisflavi
Pathway
rmf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D5E69_00355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmf03400
]
D5E69_00355 (mfd)
Enzymes [BR:
rmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D5E69_00355 (mfd)
DNA repair and recombination proteins [BR:
rmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D5E69_00355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QHA34451
LinkDB
All DBs
Position
65677..69210
Genome browser
AA seq
1177 aa
AA seq
DB search
MKGILTYVHQSEEVQSLITGIEERLSEQLVAGLSGSSRSAYIADVYLQTKRSTIVVTHNL
FQAQKIYEDLVQFLSEDEVYLYSANELIAAELSVASPELRAQRIEVLNKLSQRQNGVYIV
PVSGLRKILPPMDLWTKNQIRFNVGEDIDLDEVLNQLVQMGYQRAGMVSTPGEFSLRGGI
VDIFPLTSQHPVRIELFDTEIDSIRTFSVEDQRSIDKLKTVDIGPATEVLLTYQNIERLI
GEINQGLSKSLKKVKSAGVKEKMTEYIGHEIEQLENGQVPEQIFKYLSLAYETPASLLDY
LPEDGVLFFDEYSRVQEMSESLEKEEAEWYTSLLSEGQIIHDMVVSHPFASLISNAKRSK
VYFSLFLRHIPNTSPQNIFNVSTKPMQNFHGQMNVLKAELDRWKKGKYTVVLLGPDEERV
KKLQRVLDDYQIEIAFVKDGAPLLDGKIQMINGSLTNGFELPLQKLAVITEEELFNKRTQ
KKPRRQKMSNAERIKSYSELKVGDLVVHVNHGIGKYLGIETLEINGVHKDYLHLKYQGSD
KLYVPVDQIDLVQKYVASENKDPKLYKLGGNEWKKVKSKVASSVQDIADDLIKLYAEREA
AKGYAFSPDGDMQREFEIAFPYEETEDQLRSIHEIKLDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETIKERFQDFPVEISLLSRFRTRKQQQETTK
GLKDGTVDIVVGTHRLLSKDIQYRDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGALIKEAIEREMARNGQVYFLYN
RVEDIERKADEISMLVPDARVAYAHGQMSENELEAVILSFLAGEYDVLVTTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYSYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDRPKQPEAS
LEVDLDLDAYIPDTYIKDGHQKIEMYKRFRALSSLKEVEELEEEILDRFGEYPEEVGYLF
LISEMKIYARNTRLDSVKQDKKGVNIFMSPEGTAAIDGSKVFDICSKHGRVVGLGMEGSK
LKISINTTRLKADKWFNMAYDIVKNLDQALKTEVHEA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggaattctaacatatgtccatcagagcgaagaagtccagtccctgatcacaggg
atcgaggaacgtctttcagagcagcttgtggcaggactttcgggttcttccagaagcgcc
tatatagcagatgtttatctgcagacgaagcggtcgacgatcgttgtcacacataatctg
ttccaggcacagaagatctatgaggatcttgtgcagttcctcagtgaggatgaagtctat
ctttattcagccaatgaactgatcgcagctgagctgagcgtggcgagcccggaactcagg
gcgcagaggatcgaagtgctgaacaagctttcccagcggcagaatggggtgtacatcgtt
ccggtgtcgggattgagaaagatcctgccgccgatggacctgtggaccaaaaatcaaatc
cgtttcaacgtcggtgaagacatcgatttggacgaggtcttgaatcagcttgtccagatg
ggctatcagcgcgcaggaatggtaagcacaccaggtgaattcagcctcaggggagggatc
gtcgatattttcccgttgacatcacagcatccggttcggattgagctgtttgatacggag
atcgattccatccgtacgttctccgtggaggatcaacggtccatcgacaaactgaaaacg
gtcgatatcgggccggcgacagaggttctcctcacctatcagaacatcgagcggctcatt
ggagagatcaatcaaggtctgtcaaagagcttgaaaaaggttaaatccgcaggcgtcaaa
gaaaagatgacggaatatatcggtcatgaaatcgagcagcttgagaatggtcaggtgcct
gaacagatcttcaagtatctgtcactcgcctatgaaacgcctgctagtctattagattat
ctgcctgaagacggtgtcctcttcttcgatgagtacagccgtgtgcaggagatgagcgag
tcccttgagaaagaggaggccgaatggtatacctcgttgttgtccgaggggcagatcatc
cacgacatggtcgtgtcgcatccttttgcatccctgatatcgaatgccaaacgttcaaag
gtgtatttctccttgttccttcgtcatataccgaatacgagccctcagaatatcttcaac
gtatccaccaagcccatgcagaacttccacgggcagatgaatgtgctgaaagcggagctc
gaccggtggaaaaaaggaaagtataccgtcgttctactgggaccggatgaagagcgtgtg
aaaaagcttcagcgcgtgctggatgattatcagatcgaaatcgcattcgtgaaagacggg
gctccccttcttgacggcaagatccagatgatcaatggaagtttgacgaacggcttcgag
cttcctcttcagaagctcgccgtcatcacggaagaagagctcttcaataaacgtacgcag
aaaaagccgagaaggcagaagatgtccaatgccgagcggatcaagagctattccgagctg
aaggttggagatctcgtcgtccatgtgaatcacgggatcgggaaatacctcgggatcgaa
acgcttgagatcaacggtgttcacaaggactatctccatctgaaataccagggcagcgat
aagctctatgtaccggtcgatcaaatcgacttggtccaaaaatatgtcgcgtcggaaaat
aaagatccgaagctgtataaactcggcgggaacgaatggaagaaggttaaatcgaaggtt
gcgtcctccgtacaggatattgccgatgacctcatcaagctatatgcggaaagggaagcg
gctaagggatatgccttctcacctgacggggatatgcagagggaattcgagattgccttc
ccatatgaagagaccgaagatcagctcaggtccatccatgaaatcaagctggatatggaa
cgggagcgtcccatggaccgccttctgtgcggggatgtcggatacgggaagaccgaagtt
gctatccgcgcggccttcaaggccattgccgacggaaaacaggtcgccctccttgtgccg
acgacgatcctggctcaacagcattatgaaaccatcaaggaacgattccaggacttcccg
gtggagatcagcctcttgagccgcttcaggacgaggaagcagcagcaggagacaacgaaa
ggcctgaaggacggaacggtcgatatcgtcgtcggtacccacaggctgttatcgaaagat
attcaataccgtgaccttggccttctcatcatcgatgaagaacaacgcttcggggtcacg
cataaagaaaagatcaaacagctgaagaccaatatcgatgtgctgacgctcacggcgaca
ccgattccacgtacccttcatatgtccatgctcggggtgagggatctgtcggtcatcgaa
acgccgcctgaaaaccgtttccctgtgcagacctatgtgatggagtataacggtgccctc
atcaaagaggcgatcgagcgtgagatggcacggaacggtcaggtctacttcctatataac
cgcgtcgaggatatcgagcggaaggcagatgaaatctccatgctggtgccggatgccagg
gtggcgtacgcccacggccaaatgtcagagaatgaactggaagccgtgatcctcagcttc
ctggcaggggaatacgatgtgctcgtcacgacgaccatcatcgagacaggggtagatatt
ccgaacgtcaataccctcatcgtcttcgatgcagatcgaatgggcctctcccagctctat
caattgaggggacgtgtcggaaggtccaaccgcgtggcgtattcgtacttcacttatcgc
aaggataaagtcctgacggaggtggcggaaaagaggcttcaggccatcaaagaattcacg
gaactcgggtctggattcaaaatcgccatgcgcgatctgaccatccggggagccgggaat
ctgctcggtgcccagcagcatggattcattgattccgtcggtttcgatctatattcccag
atgctcaaagaagcaatcgaggagcgtaaaggcgatcggccgaagcagccggaagcatcc
cttgaagtcgatcttgatcttgatgcctacattcctgatacctatatcaaggacggacac
cagaagatcgagatgtataaacggttccgtgccctttcttccctcaaggaagtcgaagag
ctcgaagaagagatccttgaccggttcggtgaataccctgaagaagtgggctatctgttc
ctgatatcggaaatgaagatctatgcgaggaatacaaggctcgacagcgtcaagcaggat
aagaagggcgtgaacatcttcatgtcaccggaagggacggcagctatcgacggatcgaag
gtattcgacatctgttcgaagcatggcagggtcgtcggactcggcatggaagggtccaaa
ctcaagatctccatcaacaccacaaggctgaaagcagacaagtggttcaatatggcatat
gacattgtgaagaatttggaccaggctttgaaaacggaagttcatgaagcctga
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integrated database retrieval system
