Rossellomorea marisflavi: D5E69_00700
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Entry
D5E69_00700 CDS
T07410
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmf
Rossellomorea marisflavi
Pathway
rmf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D5E69_00700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmf03021
]
D5E69_00700 (rpoC)
03400 DNA repair and recombination proteins [BR:
rmf03400
]
D5E69_00700 (rpoC)
Enzymes [BR:
rmf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D5E69_00700 (rpoC)
Transcription machinery [BR:
rmf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D5E69_00700 (rpoC)
DNA repair and recombination proteins [BR:
rmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D5E69_00700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QHA34496
LinkDB
All DBs
Position
131716..135315
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEPGDTALEKKQLLSEKEYRAYREKYGVKFHAAMGAEAIKKLLQ
DIDLDKEADFLKEELKTAQGQRRTRAIKRLEVVESFRSSGNDPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVQPEVWDVLEGVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDAVGEGMIFNDANEVLLAYQNGFAHLHTRIAIH
AGTLNNQTFTDQQNKQLLVTTVGKVIFNEILPDTFPFINEPTKTNLEVATPEKYFVNPGT
DVKALFKERELINPFKKGFLGNIIAEVFKKFAITETSRMLDKMKDLGFKFSTKAGITVGI
ADIVVLAEKEEILIEAQGKVDNVLKQFKRGLITEEERYDRVISIWSAAKDTIQGKLMATL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVGSIKEGTEIIEPLE
ERLLGRYSRKTLRHPETDEILVNENQLITEDLAKTIVDAGIEHVSIRSAFTCNTRHGVCE
KCYGTNLATGQKVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEMDGVITSITEGKDRQYEITVQGDVESRNYTAPYTARLKFAVNDRVLR
GQEITEGSIDPKELLKVRDVGAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGETEVLPGTLMDIHQFRDANESALLNGNTPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRAEQVLSEEISEETVTVD
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaataatttcgaatatatgaagattggtttagcttcccccgataagatc
cgttcgtggtctttcggggaggttaaaaaacctgaaacgatcaactatcgtacattaaaa
ccagaaaaagacggcttgttctgcgagcgtatcttcggtcctacgaaggactgggaatgt
cactgtggtaaatacaagcgcgtccgctataaaggtgtagtatgtgaccgctgtggtgtc
gaagtcacaaaagcgaaagtgcgccgtgagcgcatgggtcacatagaacttgctgcccct
gtatcacacatctggtacttcaaaggaatcccaagccgtatgggtcttgtcctcgacatg
tctccaagggctttggaagaagtgatctacttcgcatcctatgttgtaacagaaccggga
gatacggctcttgagaagaagcaattgctttctgaaaaagagtaccgtgcataccgtgag
aaatacggtgtgaaattccatgctgccatgggagctgaagcaatcaagaaacttcttcag
gatatcgatcttgataaagaagccgatttccttaaagaagaattgaagactgcacaaggt
caacgacgcacacgtgcgatcaaacgccttgaagtggttgaatccttcagaagctccggg
aatgatccagactggatgatccttgatgtccttcctgtcatccctccggaacttcgtccg
atggtacagcttgacggtggacgttttgcgacatctgacctcaatgatctataccgtcgt
gtcatcaaccgtaacaaccgtctgaagcgcttgttggatcttggtgctccaagcatcatc
gttcaaaacgaaaagcgtatgcttcaagaagctgttgatgcattgatcgacaacggacgc
cgcggccgtccggtaacaggaccaggtaaccgtccattgaaatccctctctcacatgttg
aaagggaagcaaggacgtttccgtcaaaaccttcttggtaagcgtgttgactactctggc
cgttccgtaatcgtcgtaggtcctaacttgaaaatgtaccaatgtggtcttccgaaagag
atggctcttgagctcttcaagcctttcgtcatgaaagaactcgtcgagcgtggccttgct
cacaacatcaagagtgcgaaacgcaagatcgaacgcgtgcaacctgaagtatgggatgta
ctcgaaggcgtcatcaaggagcatccggtccttctgaatcgtgcaccgacccttcaccga
ctcggtatccaagcgttcgaaccgactcttgtcgaaggtagagcgatccgtcttcaccca
ctcgtatgtactgcgtacaacgccgacttcgatggtgaccaaatggcggtccacgtacca
ctatcttctgaagcacaagcagaagcacgcatgctcatgcttgctgcccagaacatcctg
aacccgaaagatggtaagccagtcgttacaccatcacaggatatggtactaggtaactat
tatctaaccctggagcgtgaagatgctgtaggtgaaggtatgatcttcaacgatgccaat
gaagtattgcttgcataccaaaacggttttgcccatcttcatacacgtatcgcgatccat
gccggaactctcaacaaccaaacgttcacagatcaacaaaataaacagctgctcgtcaca
acggtcggtaaggtgatcttcaacgaaatcctgcctgatacattcccgttcatcaatgaa
ccgacgaagacgaacctcgaggtggcaacaccggagaaatacttcgttaacccaggaacg
gatgtaaaagcactgttcaaagagcgcgaattgatcaatccattcaaaaaaggattcctt
gggaacatcatcgctgaagtattcaagaagtttgccatcaccgaaacgtcacgcatgctt
gataagatgaaggacctagggttcaaattctctaccaaagcaggtatcacggtcggtatc
gccgatatcgtcgtactcgctgaaaaagaggaaatcctgattgaagctcaaggtaaagta
gataacgtcttgaagcaattcaaacgtggtctcattaccgaagaggaaagatatgatcgc
gtcatctccatctggagtgccgctaaagatacgatccaaggtaaattgatggctacgttg
gataaacgcaacccgatcttcatgatgagtgactccggtgcccgtggtaacgcatctaac
ttcactcagcttgccggtatgcgcggactcatggccaacccggctggacgtatcatcgaa
ttgccgatcaaatcaagtttccgtgaaggtctgacggtacttgaatacttcatctccact
cacggtgcccgtaaaggtcttgccgatacagccctgaaaacagccgactcaggttacctg
acccgtcgtctggttgacgtggcacaagatgtcatcgtacgtgaagaagactgtggaaca
gacagaggactccttgtcggatccatcaaagagggtacagagatcatcgaacctcttgaa
gaacgtctgctcggtcgttactcacgtaagacactccgtcaccctgagacagatgaaatc
cttgtgaacgaaaatcaattgatcaccgaagatctggctaaaaccattgttgatgcaggt
atcgagcatgtgtccatccgttctgccttcacatgtaacacccgtcacggtgtatgtgaa
aaatgttacggtacgaaccttgcaaccggtcaaaaagtggaagtcggggaagcagtcggt
atcatcgccgctcaatcaatcggggaaccaggaacgcagcttacaatgcgtacgttccat
accggtggggttgcgggagacgatatcacacaaggtcttccacgtatccaggaaatcttc
gaagcacgtaacccgaaaggtcaagcggtcatttccgaaatggatggtgtcatcacttcc
atcacagaaggaaaagatcgtcaatacgaaatcactgtacaaggtgatgtcgagtcaagg
aactacacggctccttacacggcccgcctgaaattcgcagtgaacgaccgggtactgcgc
ggtcaagaaatcacggaaggttccatcgatccgaaggaacttctcaaagtacgcgatgtc
ggtgccgtacaagaatacctattgcgcgaggtacagaaagtttaccgtatgcaaggggtt
gaaatcggagataagcacgttgaagtcatggtacgtcaaatgctccgtaaagtacgcgtc
atcgatgccggtgaaacggaagtactccctggtacactcatggatatccatcagttcagg
gatgcgaacgaaagtgcgttgcttaacggcaatacacctgcaaccggacgccctgtcctt
cttgggatcacgaaggcatcccttgaaacggattccttcttgtcagcagcttcgttccag
gaaacaacccgcgtgttgacagacgccgcaatcaaaggtaagcgcgacgagctccttgga
ttgaaggaaaatgtcatcatcggtaagttggttccagccggaacaggtatgcaacgttac
cgcagagccgaacaggtcctatctgaagaaatctctgaagagacggtcactgtcgactaa
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