Rossellomorea marisflavi: D5E69_06525
Help
Entry
D5E69_06525 CDS
T07410
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rmf
Rossellomorea marisflavi
Brite
KEGG Orthology (KO) [BR:
rmf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rmf03009
]
D5E69_06525 (rlmD)
Enzymes [BR:
rmf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D5E69_06525 (rlmD)
Ribosome biogenesis [BR:
rmf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D5E69_06525 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
Methyltransf_11
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
QHA38386
LinkDB
All DBs
Position
1231900..1233261
Genome browser
AA seq
453 aa
AA seq
DB search
MVATIHGLDDRGSGRASVWRENELGNKRKLKLTIPQTLPGEEVQVTVDKPEKKRWRTMPQ
EIITPSPERTTPPCPHFDRCGGCVWQHWEYEGQLKEKTNHVKHALEAEGFDPALVRDAMG
MDNPWRYRNKMEFTFSKEGELGLHEQGNFRKVISLETCLIASEQMVEAAMEVAAWTKEHG
LKGYDKEAHEGLLRHLMVRQSFATGELMLGVFATEAPTGDLQAAVDDLKARVEAKFPHVK
SLLWMENTDWADRTQAEEIHVLAGRDFIYDEMDGYRFRLWFDTFFQTNPTQAQKLVDLAI
EMGKPKETEKMIDLFCGVGTFSLPFASRVGALAGIEIVESSIESAKRNASDNYISNTTFL
AKDARNGIDEILESFGRPELLLLDPPRSGAGGKVMRRIGRAQPERIVYVSCNPDTFATDV
KELEAFGYKLDDVQPVDLFPHTVHVEVVASLSK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggttgcgacaatacatggattagacgacagaggctcgggccgtgccagcgtgtggcgc
gaaaacgagcttggtaataaacgaaaattgaagcttacaatccctcagacccttcctggt
gaagaagtccaggtgacggtggataagcccgagaaaaaacgctggaggacaatgcctcaa
gagatcatcacgccgagtcccgaacggacaacccctccatgcccacactttgatcgctgc
ggcggctgtgtatggcagcactgggagtacgaaggccagctcaaggaaaagaccaaccac
gtcaagcatgcccttgaagcagaaggattcgaccctgcattggtgagggatgccatggga
atggacaacccttggcgttaccgcaacaagatggagttcaccttctctaaagaaggggag
ctcggactgcatgagcaggggaacttccgaaaggtcatttcccttgaaacgtgcttgatc
gcaagcgagcagatggtggaagcagcgatggaagtcgccgcctggaccaaggaacacggc
ctgaaagggtatgacaaggaggcgcatgaaggccttctgcgccacttgatggtccgacaa
tcctttgctacgggtgaattgatgctgggcgtgtttgcaacggaagccccgacgggtgat
cttcaggctgccgtcgatgatttgaaagcacgtgtagaagcgaaattcccgcatgtgaag
agccttctgtggatggaaaacaccgattgggcagaccgtacccaggcggaagaaatccat
gtccttgccggtcgtgatttcatctatgatgagatggacgggtaccgattccgtctgtgg
ttcgatacgttcttccaaacgaacccgacacaggcacagaagcttgtggacctcgccatt
gaaatgggcaaaccgaaggaaacggaaaaaatgatcgacctcttctgtggtgtcggtaca
ttctcccttccattcgcaagccgtgtcggcgcccttgccggcattgaaatcgtggaaagc
tccatcgagtcggcaaaacggaatgccagtgacaattatatttccaacacaaccttcctt
gcgaaggatgcacgaaatggcatcgacgagattcttgagagctttggacgtcccgaactg
ctccttcttgatcccccgcgctcaggtgcaggcggcaaagtgatgagacggatcggccgt
gcccagccggaaaggatcgtctacgtatcctgcaacccggatacgttcgcgacagacgtt
aaagaacttgaagccttcgggtataagctcgatgatgtacaaccagtcgacctgttccct
cacacggtgcacgtggaagtcgtcgcaagtctgagtaagtaa
DBGET
integrated database retrieval system
