Rossellomorea marisflavi: D5E69_09300
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Entry
D5E69_09300 CDS
T07410
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rmf
Rossellomorea marisflavi
Pathway
rmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5E69_09300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmf03019
]
D5E69_09300
Messenger RNA biogenesis [BR:
rmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D5E69_09300
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
DUF5548
Motif
Other DBs
NCBI-ProteinID:
QHA35995
LinkDB
All DBs
Position
complement(1773621..1775288)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGVKFPEDELLGIDYVIPDYTYL
VKNVDKIKGLFITHGHEDHIGGIPYLLRELNIPIYSGKLAMGLIKNKLEEHGLLRNAKLN
IIQEDDVIKFRKTSVTFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERKVGESIDDIFRKVDGRVIFATFASNIHRLQQ
VVEAAVYHNRKVAVFGRSMEAAITIGQELGYINAPKETFIEHNQINRLPANEVAILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTISVNRTINLLYRAGAEVIHGPL
SNIHTSGHGGQQEMKLMLRLMNPTFFMPIHGEYRMQKMHAQLGVDCGVDPDNCFIMDNGD
VLALSSDSAQVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKDFKI
ASGPDLISRGFVYMRESGDLINEAQTLISKHLNKVLERRTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtcaagaatgaccagactgcagtatttgccctcggtggtctaggtgaaatc
ggtaaaaacacatatgctgtacagttccaggatgaaattatcttgattgatgcaggggtt
aaattccctgaggacgaactcctcggtatcgactatgtgatccctgactatacgtatctc
gttaaaaacgtagataaaatcaagggacttttcatcacacacggtcacgaagaccatatc
ggcgggattccgtatctccttcgcgagctgaacattccgatctacagcggaaagcttgcc
atgggattgatcaaaaataaacttgaagagcatggccttctccgcaatgccaagctcaac
atcatccaagaagatgatgtgatcaaattccggaaaacgtccgtcacgttcttccgaacc
acccacagcatccccgattcttacgggatcgtggtcaagacgcctccgggcaatgtcgta
cacacgggtgacttcaaattcgacttcactccagtaggggaacctgccaatctgaccaaa
atggcagaaatcggaaaagaaggcgtcctatgtctcctctccgatagtacaaatgctgag
gtaccgaactttacgatgagcgaacgtaaagtaggcgaaagcatcgacgatatcttcagg
aaagtggacggccgcgttatttttgctacattcgcatccaacatccaccgcctgcagcag
gttgtcgaagcagcggtctaccataaccgtaaagtggctgtattcggccgaagcatggaa
gcggccatcaccatcgggcaagagctcggatacatcaatgcgccgaaggaaaccttcatt
gagcataatcaaatcaaccgattgcctgcgaatgaagtggccatcctgtgtacaggttcc
caaggggaaccgatggctgccctgtcccgtattgccaacggaacccatcgccagatccag
atacaaccaggtgacaccgttgtattctcgtcttcgccgatccctgggaatacgatcagt
gtaaaccgcacgatcaacctcctgtaccgtgctggagccgaagtgatccacggaccactc
agcaacatccatacgtccggacatggtggtcagcaggaaatgaaactgatgctccgtctg
atgaaccctaccttcttcatgccgatccacggtgagtaccgcatgcagaagatgcacgct
cagctcggcgtcgactgcggtgtagatccagataattgtttcatcatggataatggagac
gtcctcgccctcagcagcgattctgctcaagtggcagggaagattccttcaggaaatgtc
tatatcgacggcagcggaatcggtgacatcggaaacatcgtcctccgtgatcgacgcatc
ctttcagaagaaggacttgtcatcgtcgtggtcagcatcaatatgaaggacttcaagatt
gcttccggccctgacctcatttcacgcggatttgtttatatgcgtgaatccggtgacctg
atcaatgaagcacagaccttgatctcaaaacacctgaacaaggttcttgaaagaaggacc
actcaatggtcagaaatcaagaatgaaatcacggatacactggctccattcctatacgaa
aaaacaaaacgtcgtcctatgatccttccgatcatcatggaagtctga
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