Rossellomorea marisflavi: D5E69_10415
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Entry
D5E69_10415 CDS
T07410
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rmf
Rossellomorea marisflavi
Pathway
rmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5E69_10415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmf03019
]
D5E69_10415
Messenger RNA biogenesis [BR:
rmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D5E69_10415
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QHA36196
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Position
1989923..1991599
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AA seq
558 aa
AA seq
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MVSNSRVKHEEIKIIPLGGVGEIGKNMYIVEVDEDIFVIDAGLMFPENEMLGIDIVIPDI
QYLEQNRGRVKGIFLTHGHEDSIGAISYLLDKVRAPVYGTRLTNALVKARLKDEQVRTDV
KFYTIHSDSRLQFNGVDVTFFKTTHSIPDSVGVCIHTSQGAIVHTGEFKFDQSAKHFYRP
DLGKMAQIGEEGVLCLLSDSTEAERPGFTTSESVIETHLNSAFRKARGRVIVACFASNLI
RLQQVFDAAEQNKRKVVVVGKSLKRVYDVALKLGYLHVREDLIIGIDQIGDYSSDEVVIL
ATGSHGEPFEALQRMAKRSHRHVNIEKGDTVLITATPSPGMEVIAGRTIDMVYRAGAEVL
TADKKVHVSGHGSQEDLKLMLNIMKPKYFVPIQGEYKMLIAHSKIAHDIGLPFKQIFILD
KGDILQYKDGKMRMGGRVQAGNVLIDGIGVGDVGNIVLRDRRLLSEDGVFTVVVTINRKS
KSIVAGPEIISRGFVYVRESEALIEKASEIVESVVHNYLQKGSFEWTTIKQDVRDQLNYF
LYNKTRRRPMILPIIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtaatagcagagtgaaacacgaggaaatcaaaatcatccccttgggcggagta
ggggaaatcggtaagaatatgtatattgtagaagtcgatgaagatattttcgtcatcgat
gcggggctgatgttccctgaaaatgaaatgctcgggatcgatatcgtgataccggatatc
caataccttgaacaaaaccggggaagagtaaaagggatcttcctgacccatggtcatgaa
gatagcatcggggccatttcttacctactggataaggtacgggcaccggtttacgggact
agattgaccaatgccctcgtgaaggcaaggctgaaagatgagcaggtgcgcacagacgta
aagttctacaccattcattcggacagcaggcttcagttcaacggtgtggatgtgacattc
ttcaagacgactcacagcataccggactcagtcggtgtttgcatccatacgtcccaaggg
gccatcgtgcatacaggcgaattcaagttcgatcagtccgccaagcacttctatcgcccg
gacctcggaaagatggcgcagattggggaggagggtgtcctctgtcttctgtcggatagc
actgaagcagagagacctggtttcaccacttcggaatccgtcattgaaacgcatctgaac
agtgcgttcagaaaagcaaggggccgggtgatcgtagcatgcttcgcttcgaatctcatc
aggctgcagcaggtatttgatgcagctgaacagaacaagaggaaagtcgtggtcgtcggt
aaaagcctgaagcgagtgtacgatgtcgccctgaagcttgggtatctccatgtacgggaa
gacttgatcatagggatcgaccagattggcgactattcaagtgatgaagtggtcatcctt
gccaccggctcacacggagaaccattcgaggcccttcagcgtatggccaagcgttcccac
aggcatgtgaacatcgagaagggagataccgttttgatcacggcgacaccttcaccgggc
atggaagtgatagccggaagaacgatcgacatggtgtacagagcgggagcggaagtattg
accgctgataagaaggtgcatgtttccggccatggctcacaggaagacctgaaacttatg
ctcaatatcatgaaaccgaaatacttcgtcccgattcaaggggaatataaaatgcttatt
gcccatagtaagatcgcacatgatatcggtcttcctttcaagcagatcttcatcctcgac
aagggagatatcctccagtataaagacgggaagatgaggatgggtggcagggtccaggcc
ggtaatgtcctgatcgatgggataggagtgggggatgtcggcaatatcgtcctcagggac
agaagactcctctctgaagatggtgtattcactgtcgtcgtcacaatcaaccggaaatca
aagagcattgttgcaggaccggaaatcatctccagaggatttgtttatgtgagggaatca
gaagccctcattgaaaaagcgtcagagatcgtcgagagtgtggttcataattatctccag
aaagggtcattcgaatggacgaccatcaagcaggatgtaagggaccagctcaactacttc
ttatacaataaaacgagaagaagaccgatgattctcccgatcatcatggaagtttaa
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