Rossellomorea marisflavi: D5E69_18585
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Entry
D5E69_18585 CDS
T07410
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rmf
Rossellomorea marisflavi
Pathway
rmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5E69_18585 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmf03019
]
D5E69_18585 (rnr)
03016 Transfer RNA biogenesis [BR:
rmf03016
]
D5E69_18585 (rnr)
Enzymes [BR:
rmf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D5E69_18585 (rnr)
Messenger RNA biogenesis [BR:
rmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D5E69_18585 (rnr)
Transfer RNA biogenesis [BR:
rmf03016
]
Prokaryotic type
tRNA degradation factors
D5E69_18585 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_RNR_1st
S1_RRP5
OB_Dis3
CSD
MarR_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QHA37597
LinkDB
All DBs
Position
complement(3566427..3568775)
Genome browser
AA seq
782 aa
AA seq
DB search
MDENIKGHVDKLLSYMKEEAYKPLTVQELEEAFGIEGSGNFKDFVKALVVMEEKGLVVRT
RSNRYGLPEKMNLVRGKVSAHAKGFAFVIPEEQGMDDIFIPPNETSNAMHGDIVLVRVSA
ASSGSRREGTIVRIVERGVDQIVGTFTESKHFGFVIPDDKKFASDIFIPKSAQKGATEGH
KVVVKLTAYPEGRKSAEGEVIEILGHKNDPGVDILSIIHKHGITVEFPEEVMEQTNQVPD
EINPSELENRRDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTYYVKESS
PIDEEAFDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCDMEITPSGEVVKHEI
FQSVIKTAERMTYSDVNKILVDKDEELRSKYEPLVPMFEDMEKLAQILRTKREKRGAIDF
DFKEAKVLVNEEGEPTEVVMRERSVAEKLIEEFMLAANETVAEHFHWMEVPFIYRIHEDP
KEDKLMRFFEFITNFGLIVKGSANSIHPRALQEIIDDVQGKAEEMVVSTMMLRSMQQAKY
DPESLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKVDQATRDKWGAQMGNIAQ
HTSSRERRAVDAERETDELKKAEYMEDKVGEEYDGIISSVTNFGLFVELPNTIEGLVHVS
YMTDDYYRFDERQLAMIGERTANVYRIGDEITVRVVNVNKDERAIDFEIVGMKGTRRRDD
KARSFRPERKGKPTSKPGKKPADKDKKEGGEWSTRPPKNNKKKKKNKKFFDNAPKSKRKK
KK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaatattaaagggcatgtggataagctcctttcttacatgaaggaagaagcc
tacaagccattgacggtacaagagctggaggaagcattcggaatcgaggggtcagggaac
ttcaaggatttcgtcaaggcgcttgtcgtcatggaagagaagggattggtggtgcgtaca
agaagcaaccgctacggtcttcctgaaaaaatgaatctggtaagagggaaagtatcggca
catgccaagggcttcgcctttgtcatcccggaagagcaggggatggatgatatcttcatc
ccgccgaatgaaacaagcaatgcgatgcacggggatatcgtcctcgtacgggtatcggct
gcttcatcgggctcaagacgcgaagggaccatcgtccgcatcgtcgagcgcggtgtcgat
cagattgtcgggacattcaccgaaagcaaacatttcggctttgtcatccctgatgataag
aagttcgcaagtgacatcttcatcccgaaatccgcccagaagggtgcgacggaaggacat
aaggtcgtcgtgaagctgacggcttatccggaaggacgcaagagcgcagaaggggaagtc
attgaaatactcggtcataaaaatgatccgggcgtcgatatcctttccatcatccataag
catggcatcaccgtcgagttccctgaagaagtcatggagcagacgaatcaagtgcctgat
gaaatcaacccatccgagcttgagaaccgccgcgatttgcgcgatcaaacgatcgtcacc
attgacggggccgacgcaaaggacctcgatgatgccgtcacggtcacgaagctcgacaac
ggaaactacaagctcggcgtacatatcgccgatgttacctactatgtgaaagaaagctca
ccgatcgatgaggaagcattcgatcgtggtacatccgtctacctcgtggaccgggttatc
ccgatgatccctcaccgactgtcgaacggtatctgttcactgaacccgaaagtcgaccgc
ctgacgctttcatgtgatatggagatcacacctagcggggaagtcgtgaagcatgagatc
ttccagagtgtgatcaagactgctgagcggatgacctactcagacgtcaacaagatcctt
gtggacaaagatgaagagctgagaagcaagtacgagccactcgtcccgatgtttgaggac
atggagaaacttgctcagatccttcgcacgaagcgtgagaagcgcggtgccatcgacttc
gatttcaaagaagcgaaggtgctcgtgaacgaagaaggcgagccgacggaagtcgtcatg
cgcgagcgttccgttgccgaaaagctcatcgaggaattcatgctggcagcgaatgaaact
gtcgcagaacacttccactggatggaagtaccgttcatctatcgtatccatgaagatccg
aaggaagataagcttatgcgtttcttcgagttcatcacgaacttcggactcatcgtgaaa
ggctcggcgaactcgatccatcctcgtgccctccaggaaatcatcgatgatgtccagggg
aaagcggaggagatggtcgtctccacgatgatgctgcgctccatgcaacaggcgaagtac
gatccggaaagccttggtcacttcgggctggcaacggagttctatacccactttacctcg
ccgatccgccgttatccggatctgatcgtccaccgattgatcaggacatacttgattgaa
ggaaaggtcgaccaagcgacgcgcgacaaatggggagcacagatggggaacatcgcccag
catacctccagccgcgaacgccgtgccgtcgatgctgagcgtgagacggatgagctgaag
aaagcagagtacatggaagacaaggtcggggaagagtacgacgggatcatcagctccgtt
accaacttcggactgttcgtcgagcttccgaatacaatcgagggtcttgttcacgtgagc
tacatgaccgacgactattaccggttcgacgagcgtcagctggccatgatcggagagcgt
acggcaaacgtctaccgcatcggtgacgagatcaccgtccgcgtcgtgaacgtcaacaag
gacgaacgcgccattgacttcgagatcgtcggcatgaaagggacccgtcgccgcgacgac
aaagcccgctcattccgaccggaacgtaaaggcaaaccgacaagcaagccaggcaaaaag
cctgctgataaagacaaaaaagaaggcggcgaatggtccacacgcccgccgaagaataat
aagaagaaaaagaagaacaaaaagttcttcgataatgctccaaaaagcaaacgcaaaaag
aaaaagtaa
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