Rhodothermus marinus SG0.5JP17-172: Rhom172_0198
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Entry
Rhom172_0198 CDS
T01606
Name
(GenBank) Lytic transglycosylase catalytic
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rmg01011
]
Rhom172_0198
Enzymes [BR:
rmg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Rhom172_0198
Peptidoglycan biosynthesis and degradation proteins [BR:
rmg01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Rhom172_0198
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
LysM3_LYK4_5
SLT
LysM1_NFP_LYK
LysM_RLK
HTH_28
HTH_23
NMB0315_dom_I
LysM2_CERK1_LYK3_4_5
HTH_Tnp_4
Sigma70_r4
DUF3071
HTH_Tnp_ISL3
HTH_11
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AEN72146
LinkDB
All DBs
Position
complement(207783..209984)
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AA seq
733 aa
AA seq
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MRAAVLRGLFLLLIAWSLVGAVQAQDTSWIAPTLPLERLQAYPSEEIPFARRVRLLGAGL
AGLLPPSDSLSEAELLEYLARLYDQQARILKAEADGDLDQAAQLLDEALEALAALSRQPG
IEADVRFRELYRSLLVEYEQLYGTPPDTLTLSYGDIFAFREAMFAAMEAVREPLLEDVFT
PNLTVPASSVPLTMNRLVKASMDYLLREPEKHLLRWLSRAETYFPMIEQIFEEEGVPDEL
KYLAMIESGLNPYARSRAGAVGMWQFMAGTARLYNLNITPWVDERRDPEKSTRAAARHLK
DLYAMFGDWHLALAAYNAGAGRVQRALNQARMRHGTGQLTFWDIYPYLPRETRNYVPMFI
AAALVASNPTALNLTVEPGPRYEYDYVPVQGMLSLEEIAHLAGTDVATLRALNPELRQNT
LPPSRGPYFIRLPLGSYARFAEAYARLPEDRKRPVTTYTVRRGDALSIIARRFGVSVSAL
MRANGLHSTVIRPGQRLIVPVPHYESTNALQLAEAKPVSVQYGSRAVRPLYSTQPIPPTA
PATTAQPTALETSSAERNEPSRETTSATTESRTPEAPTRVVYTVRRGDALSEIAQKYGVS
VADIKRWNNLSGNTIRVGQELVLYLSEPVTPERVVYTVRRGDTLSEIAQRFGVSVTAIKR
WNNLDDNTIQIGQRLTIYPEAGDTQGYTIYHVRPGDTLSEIAKRFGVSVRDIQRWNGLRS
SRIYPGQRLKIFS
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagggcggctgtgttacgagggctattcttgctgctgattgcgtggagtctggtcggc
gcagtacaggcgcaggatacgagctggatcgctccgacgcttccgctggaacgccttcag
gcgtatccttccgaagaaattccctttgcccgccgggtgcggctgctcggcgccgggctg
gccggactgctcccgccgtccgacagcctgagcgaagcggaactcctcgaatacctggcc
cgcctttacgatcaacaggcgcgtattctcaaggcggaagcggacggcgatctggatcag
gccgcccagcttctggacgaagcgctggaagccctggccgcgctgagtcgtcagcccggc
atcgaggcggatgttcggtttcgtgaactgtaccgctcgcttcttgtcgaatacgagcag
ctctacggcacgccgccggacacgctgacgctgagctacggcgacatcttcgccttccgc
gaggccatgttcgcggccatggaggccgtgcgcgagccgctgctggaagacgttttcacc
ccgaacctcacggtccctgccagctcggttccgctcaccatgaaccggctcgtcaaagcc
agcatggattatctgctgcgcgagccggaaaagcacctgttgcgctggctcagccgggcc
gaaacctacttcccgatgatcgagcagatcttcgaggaagagggcgtgccggacgaactg
aagtacctggccatgatcgagagcggtctgaatccctatgcccggagccgggccggtgcc
gtgggcatgtggcagttcatggccggaacggcccgcctgtacaacctgaacattacgccc
tgggtggatgagcgacgggatccggaaaaatccacgcgggcggccgcccgtcacctgaag
gacctgtacgccatgttcggcgactggcatctggcgctggccgcttacaatgccggggcc
ggtcgggtccaacgggcactcaatcaggccaggatgcgccacggcacaggccagctcacc
ttctgggacatctacccgtacctgccgcgcgagacccgcaactacgtgcccatgtttatt
gcggcggcgctggtggcctccaatcccaccgccctgaacctgacggtcgagccgggcccg
cgctacgaatacgactacgtgcccgtacagggcatgctttctctggaagagatcgcgcac
ctggccggtaccgacgtggccacgttgcgcgcgctgaatcccgaactgcgccaaaacacg
ctaccgcccagccggggcccctacttcatccgcctgccgctgggcagctacgcacgcttc
gcggaggcctacgcccgattgccggaagatcgtaagcgaccggtcacgacctacacggtg
cgtcgaggcgacgcgctcagcatcattgcccggcgcttcggcgtgagcgtctcggccctg
atgcgggccaacggcctgcacagcacggtgattcgtccgggccagcgtctgatcgtgccg
gtcccccactacgaaagcacaaacgccctgcaactggccgaggcgaagcccgtcagcgtg
cagtacggcagccgggccgtccgcccgctctactcgacgcaacccatcccgcccacggcg
cctgctaccacggcacaaccgaccgcgctggaaacgtcctcggcggagcgcaacgaaccc
tcccgtgaaaccacatcggcgactaccgagtcccggacgccggaagcccccacgcgcgtc
gtgtacaccgtgcgtcgcggggacgccctcagcgaaatcgctcagaagtacggggtctcg
gtggccgacatcaaacgctggaataacctctccggcaacaccatccgcgtcggccaggag
ctggtcctctatctctccgagccggtcacgcccgagcgcgtggtgtacaccgtacgccgg
ggcgacacgctcagcgaaatcgcccagcgcttcggcgtttccgtgaccgctatcaaacgc
tggaacaaccttgacgacaataccatccagatcggccagcgcctgaccatctatccggaa
gccggagacacgcagggttataccatctaccatgtgcggcccggcgacacgctcagcgaa
attgccaagcgcttcggcgtttcggtacgcgacatccagcgctggaatgggctgcgttcc
agccggatctatccgggccagcgcctgaaaattttttcctga
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