Rhodothermus marinus SG0.5JP17-172: Rhom172_0396
Help
Entry
Rhom172_0396 CDS
T01606
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03420
Nucleotide excision repair
rmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rhom172_0396
03430 Mismatch repair
Rhom172_0396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_0396
Enzymes [BR:
rmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rhom172_0396
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rhom172_0396
MMR (mismatch excision repair)
Other MMR factors
Rhom172_0396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
Viral_helicase1
DEAD
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEN72342
LinkDB
All DBs
Position
442469..444775
Genome browser
AA seq
768 aa
AA seq
DB search
MRTFLLQSDPNAENETPEPLPEAAARILEGLNPVQRQAVQVTEGPVLIIAGPGSGKTRTL
THRIAYLIATGRARPHQILALTFTNKAAREMMERIERLVGAEAARHIWMGTFHAIFARIL
RREGQRIGYTPDFSIYDTDDSERLLRELMARYHIDPRQYSPRTIRHLISGAKNQMIGPEE
YARLVASPVQEKAAKLYGPYQEALRKANALDFDDLLLKPIELFEQHPDVLQRYQERWRYL
HIDEYQDTNRAQYVLARKLAAAHRNLCVVGDDAQSIYAFRGADIGNILSFQRDYPDATVI
RLEQNYRSTRRILKLAEAIIQQNRDQLEKQLWTENPEGDPIMLIEALSERDEAQKVEQRI
RDLHVRYGYAFRDFAVLYRTNAQSRSLEEALRRGGIPYRVVGGLSFYQRKEIKDVLAYLR
LLVNPHDAASLQRVINYPARGIGQRTVEVLADYARQHGLSLWQAIERVEEVGLPTRAQKA
VQEFHFLIARHAAKMDAMPVDELARSLLQESGLLEELRREGTPEALARWENVQELLNAIA
EYVATAGEQATLSGFLQEVALLTDLDEMPEDNRVTLMTLHASKGLEFPVVFITGLEEGLF
PLAQATQDRKDLEEERRLFYVGVTRAQRHLFLCYARSRYRYGEQQPSVRSRFLEELDTDV
IVTEAGLPFRRGEVLDRRPRSDRHVEMDPHYYRRPLQQRSSSAAARRVVYDEGAGEIVPG
ARVEHAIFGEGKVLALEGQGDQARAIVFFPEVGQKKLVLKFARLRRID
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacgtttctgctccaatccgacccgaatgctgagaacgagacgcccgagccgttg
cccgaagccgccgcgcgcattctggagggactcaaccccgtgcagcggcaggccgtgcag
gtgaccgaaggccccgtgctgatcattgccgggccgggctcgggcaagacgcgcacgctc
acgcatcggatcgcctacctgattgccaccggacgggcccgaccgcaccagattctggcc
ttgaccttcacgaacaaggcggcccgcgaaatgatggagcgcatcgagcgcctggtgggc
gccgaggccgcccggcacatctggatgggcaccttccacgcgattttcgcccgcatcctg
cgtcgggaagggcagcgcatcggctacacaccggacttcagcatctacgacacagacgac
tcggagcggctgctgcgcgaactgatggcgcgttaccacatcgatccgcgccagtacagc
ccgcgcacgatccgccacctgatctccggcgccaaaaaccagatgatcgggccggaggaa
tacgcccgtctggtggcttcgcccgtgcaggaaaaagcggcaaagctctacggtccctat
caggaggcgctgcgcaaagccaacgcgctcgacttcgacgacctgctgctcaaacccatc
gaattgttcgagcagcaccccgacgtgttgcagcgctaccaggagcgctggcgctacctg
cacatcgacgagtatcaggacacgaaccgggcgcagtacgtgctggcacgcaagctggcc
gcggcgcaccgcaacctgtgcgtggtgggtgacgacgcgcagtcgatctacgccttccgg
ggtgccgacatcggcaacattctgtcgtttcaacgcgactacccggatgccacggtcatc
cggctggagcagaactatcgctccacgcgccgcatcttgaagctggccgaggcgatcatc
cagcaaaaccgggatcagctcgaaaaacagctctggaccgaaaacccggaaggcgacccg
atcatgctcatcgaggcgctttcggagcgcgacgaggcccagaaggtggagcaacgcatc
cgggacctgcatgtgcgctacggctacgccttccgcgattttgccgtgctctatcgcacg
aacgcccagagccgatcgcttgaagaagcgctccggcgtggtggcattccctaccgcgtg
gtgggcggactgtcgttctatcagcgcaaggaaatcaaagacgtgctggcctacctgcgc
ctgctggtcaacccgcacgacgcggccagcctccagcgcgtgatcaactacccggcgcgc
ggcatcggtcagcgcacggtcgaagtgctggccgattatgcccggcagcatggactgagt
ctgtggcaggccatcgagcgcgtggaggaggtcgggctcccgacgcgtgcgcagaaggcc
gtgcaggaattccacttcctgatcgctcgccatgcggcgaagatggacgccatgccggtg
gacgagctggcccgctcgctgctgcaggaaagcggtctgctggaggagttgcgccgcgag
ggcaccccggaggcgctggcgcgctgggagaacgtgcaggagctgctgaacgccattgcc
gagtacgtggccacggccggcgagcaggccacgctgagcggctttctgcaggaggtggcg
ctgctgaccgatctggacgaaatgcccgaggacaaccgcgtcacgctcatgacgctgcac
gcctcgaagggcttggaatttcccgtagtgttcatcaccggcctggaagaggggcttttc
ccgctggcgcaggccacgcaggatcgtaaggacctggaggaggagcggcggttgttttac
gtgggcgtgacgcgggcgcagcggcacctgtttctctgctatgcccgcagccgctatcgc
tacggcgagcagcaacccagcgtccgcagccgctttctggaagaactcgatacggacgtg
atcgtgaccgaggccgggcttcccttccgccgcggcgaggtgctggaccgtcgcccccgg
agcgatcggcacgtggaaatggatccgcactactaccgccggccgttgcagcagcgaagc
agctccgccgcagcgcggcgcgtggtgtacgacgaaggcgccggcgagatcgtccccggc
gcccgcgtggagcacgccatcttcggcgaaggcaaggtgctggcactggaggggcagggc
gatcaggcccgggccatcgtcttcttccctgaagtgggccagaaaaagctcgtgctcaaa
tttgcccgcctccgccggatcgattga
DBGET
integrated database retrieval system
