Rhodothermus marinus SG0.5JP17-172: Rhom172_0502
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Entry
Rhom172_0502 CDS
T01606
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmg03016
]
Rhom172_0502
Enzymes [BR:
rmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Rhom172_0502
Transfer RNA biogenesis [BR:
rmg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Rhom172_0502
Prokaryotic type
tRNA splicing ligases
Rhom172_0502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AEN72446
LinkDB
All DBs
Position
569535..572501
Genome browser
AA seq
988 aa
AA seq
DB search
MAELRFVKIHDYLWEIPRTGGMRVPARIYASEKILRELKEDQAPQQAVNVAHLPGIVKYS
LAMPDIHWGYGFPIGGVAAFDLDEGVISPGGVGYDINCLTGEARVLHAHGYYRTIAEIVE
AGTNDPLCSYRFAVRRPEPARIIYRFGEAPRTRVWRVWTRGGDTVEATEDHPFWTPQGMV
PLRELRPGDRVAFCPFEGVPYEAPSSETILSPEAFWEALRQLGIPDRGRRYRQLVRYLTR
RGLLPLRYDSPALPLLCKLLGYLLGDGTCYRERNGRIRLVAYGRAEDLEAMRHDLEALGV
RAARLRRRRRRHRVQTVYRPYAFEREEVSLHITSRAFALLLVALGMPIGDRTAQDFEAPA
WLERAPRWQKRLFLAGLFGAELSAPRLMSGHARTFATPVLTLTKRAPFAESGRRFLETLA
RWAAELGVRTQAIEARRELLATGERVRWQWRMASDPASLRALWGRIGYEYNFRRQHEAAC
ALQYVKYKEQVVRQRQEAVRLLRRWRAAGVSVGEATRRLADQDINRRFVERTYYEQRGDT
PRIGDAVCSYAAFRRERQNGQEPLGCVWEEIVRIEPVERPELRVYDLTVDHPDHNFIANG
FVVSNCGVRLLASRLTYEEVEPHLERLVEMLFRRVPTGVGASGALRVSKQELRRVAVEGA
HWAVRHGFGSEVDLEFIEENGRIEGADPAAVSERAYERGADQLGTLGSGNHFLEVGYVAQ
IFDDEAARVMGLFPGQVTVIIHTGSRGFGYQICDDYLAVMDRALARYHIRLPDRQLACAP
LRSPEGQQYLAAMRCGINFAFANRQIIAHNTRKAFAEALGMREEDIGLRTVYEVAHNIAK
IEEHTIDGERRRVCVHRKGATRAFPPGHSQIPAAYRSIGQPVLIPGDMGRYSYVLVGTEQ
AMQETFGSTCHGAGRQLSRTKAKKVASGRHVAEELRARGIIVRGASIRTINEEIPEAYKD
VAEVVEVCHRAGISRKVAQLRPIGCIKG
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcggaattgcgctttgtcaaaattcacgactacctctgggagattcccaggacgggc
ggcatgcgggtgcccgcccgcatctatgccagcgagaagatcctgcgcgaactgaaggaa
gaccaggcgcctcagcaggccgtcaacgtggcgcatctgccgggcatcgtcaagtactcg
ctggccatgcccgacattcactggggctatggctttcccatcggcggggtggctgcgttc
gatctggacgaaggcgtgatctcgcccggcggtgtcggctacgatattaattgccttact
ggcgaggcgcgggtgctccatgcgcatggctactaccgcacgatcgccgaaatcgtcgaa
gccggcacgaacgatccgctctgcagctatcggtttgcggtgcgtcggcccgagccggcc
cggatcatttatcgtttcggggaggcgccgcgtacgcgcgtctggcgcgtctggacccgg
ggcggcgacaccgtggaggctaccgaagaccatccgttctggacgccgcaggggatggtg
ccgctgcgggagctgcgtcccggcgatcgggtagcgttctgtcccttcgaaggcgtgccc
tacgaggccccgtcatccgagaccatcctgagccccgaggctttctgggaagcgctgcgg
caactgggcattcctgatcgcggtcggcgttaccggcagcttgtgcgctatctgacgcgc
cgtggtctattgccgctgcgctacgattcgcctgcgttgccgctcctctgcaagctgctg
ggctatcttctgggcgatggcacctgctaccgggagcgcaacggccgtatccgactggtc
gcctacggtcgcgcggaagatctggaagcgatgcggcatgatctggaggcgctgggagtc
cgtgcggcccgactgcgtcggcgtcgccgtcggcatcgggtgcagacggtttaccgcccc
tatgccttcgagcgcgaagaagtcagcctgcacatcaccagccgggcgtttgcgctcctg
ctggtcgcgctgggcatgccgatcggcgatcggacggcccaggacttcgaagcaccggcc
tggctggagcgagcgccccgctggcagaaacggctgtttctggccgggttgttcggggcc
gagctgtcggccccgcggctcatgagcgggcatgcgcgtacgtttgcgaccccggtgctg
acgctgaccaaacgggcaccgtttgccgaaagcggccgccgtttcctggagacgctggcg
cgctgggcagccgaactgggcgtacgcacgcaggccatcgaagcccgccgggagctgctc
gctaccggcgaacgcgtgcgctggcagtggcggatggcatccgatccggccagcctgcgg
gcgctctggggacgcatcggttacgagtacaacttccgacggcagcacgaggccgcctgc
gcgctgcagtacgtcaagtacaaggagcaggtggtgcggcagcgccaggaggcggtgcgg
ctgctgcgtcgctggagggcggccggcgtgtcggtcggggaagcgacgaggcggctggcc
gatcaggacatcaaccggcgctttgtcgaacgcacctattacgagcagcgcggtgacacg
cctcgcattggcgatgcggtgtgcagctatgcggcatttcgccgggaacggcagaacgga
caggagcctctgggctgcgtctgggaagagatcgtgcgtatcgagccggtggaacggccc
gaacttcgggtgtacgacctgaccgtcgatcatcccgatcacaacttcatcgccaacggc
tttgtggtctccaactgcggcgtgcggctgctggccagccggctgacctacgaggaggtc
gagccgcatctggagcgtctcgttgagatgctcttccggcgcgtgcccaccggcgtaggc
gcctcgggtgcgctcagggtctcgaaacaggagctgcggcgcgtggccgtcgagggcgcg
cactgggccgtgcgccatggattcggttcggaagtcgatctggaattcattgaagaaaac
ggccgtattgaaggggccgatcctgcagccgtctcggagcgcgcctatgagcggggcgcg
gaccagctcggcacgctgggttcgggcaaccacttcctggaggtcggctacgtggcgcag
atcttcgacgacgaggcggcgcgggtcatggggctgttcccggggcaggtgaccgtcatc
attcacaccggatcgcgcggcttcggctaccagatctgcgacgattatctggccgtcatg
gaccgcgcgttggccaggtaccatatccggttgccggatcgccagctcgcctgcgcaccg
ctgcgctcaccggaaggccagcagtatctggccgccatgcgctgcgggatcaacttcgcc
ttcgccaaccgccagatcatcgcgcacaacacgcgcaaggcgttcgccgaggcgctgggc
atgcgcgaagaggacatcgggctgcggacggtctatgaagtggcacacaacatcgccaag
atcgaagagcacacgatcgacggcgagcggcggcgcgtgtgcgtccaccgcaaaggtgca
acgcgggctttcccgccgggccattcccagattccggcggcctaccggagtatcggccag
cccgtgctgattccgggcgacatgggacgctactcctacgtgctggtcggcaccgagcag
gccatgcaggagacgttcggcagcacgtgccacggggccggtcgccagctcagccggacg
aaggccaagaaggtagccagtggccgccacgtggccgaggagttgcgcgcccggggtatc
atcgtgcggggcgctagcatccgcacgatcaacgaggagattcccgaagcctataaagac
gtggccgaggtggtcgaggtgtgccatcgggcgggcatctcccgcaaggtggcgcagctc
cggccgatcggctgtatcaaaggataa
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