Rhodothermus marinus SG0.5JP17-172: Rhom172_0741
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Entry
Rhom172_0741 CDS
T01606
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Rhom172_0741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmg03021
]
Rhom172_0741
03019 Messenger RNA biogenesis [BR:
rmg03019
]
Rhom172_0741
Transcription machinery [BR:
rmg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Rhom172_0741
Messenger RNA biogenesis [BR:
rmg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Rhom172_0741
U7-dependent histone pre-mRNA processing factors
Rhom172_0741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RMMBL
Lactamase_B
Beta-Casp
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
ZW10_C
Motif
Other DBs
NCBI-ProteinID:
AEN72676
LinkDB
All DBs
Position
836056..837450
Genome browser
AA seq
464 aa
AA seq
DB search
MIFVALGDTEAIGANCYFVKLDGTGLVLDVGVDPNEEGPESLPRFELIHRNPDWYIDHAI
VTHAHHDHIGALPVLLREFPHVLVHMTRVTRQLADLLLPASARLQRRRLQEGRSSYGPLF
DEKQLEGYSYLYLTHEPGQDFSVTGLRGRSPVRARFYYAGHVLGSAGVLLTHEEDGRRQR
IFYTSDTNMRAQAIIPGGDYPEEPVDVLILESTAGADPEAERTTRRLEEERFGEAVRRVL
DRGGSVLVPAFALGRAQEVLAVIDRLKREKTLPADVPVYTAGTMRAIADLYDRTRFVTPR
LDPSFEVFRVEQRRLPRRLEAVRQALAEPAIYVLSSGMMFERSLSNRMAQLLVEDERHAI
FLVGFAREDSPAGRLLAAAEAGADEIVLDEQRGPQPLRCEVARFRFSGHSHRRDLLRLVE
RLQPRHVILVHGDEDAREWMADNIRFFYPEVNVWMPRSGEPLEL
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcgtcgcgctgggtgataccgaggcgatcggggccaactgctatttcgtgaag
ctggacgggacgggactcgtgctcgacgtgggggtcgatccgaacgaggaaggacccgag
agcctgccgcgcttcgagctgattcaccgcaatccagactggtatatcgaccacgccatc
gtcacacacgcgcaccatgatcacatcggggcgctgccggtcctgctccgcgagttcccg
cacgtgctggtgcacatgacgcgcgtcacgcgccagcttgccgatctgctgctgcccgct
tcggctcgcctgcaacgtcgccgcctgcaggaaggccgctcgagctacggaccgcttttc
gacgaaaagcagctggagggctacagctacctgtacctgacgcacgagccgggacaggac
ttcagcgtgacgggcctgcggggacgctcgcccgtgcgcgcccgcttctactatgccggc
catgtgctgggatcagccggcgtgctgctgacgcacgaagaagacggccggcgtcagcgc
attttctacacgagcgacacgaacatgcgggcgcaggctatcattccggggggcgactat
ccggaggagccggtcgatgtgctcattctggaatcgacggccggggccgatcccgaagcc
gaacgcaccacgcgccgcctggaggaggaacgcttcggcgaggcggtgcggcgcgtgctg
gatcggggcggtagcgtgctggtgccggccttcgcgctgggtcgggcgcaggaggtgctg
gccgtgatcgaccgactcaagcgggaaaagacgctgcccgccgacgtgcccgtctatacg
gctggcaccatgcgggccattgccgatctgtacgatcggacgcgcttcgtcacgccccgg
ctcgatccgtcgttcgaggtgttccgcgtcgagcagcggcggctgcctcgacggctggaa
gccgtgcgacaggcgctggccgagccggccatctacgtgctcagcagcgggatgatgttc
gagcgctcgctctcgaaccggatggcgcagctgctggtggaagacgagcggcacgcgatc
tttctggtaggattcgcccgggaagactcgccggccgggcgactgctggccgccgccgaa
gccggcgccgacgagatcgtgctcgacgaacagcgcggtccgcagccgcttcgctgcgag
gtggcacgcttccgcttcagcggccacagccaccggcgcgacctgctgcggctggtcgag
cgccttcagccccgccatgtgatcctggtgcacggcgacgaagacgcgcgcgaatggatg
gccgacaacatccggtttttctatcccgaagtaaacgtatggatgccgcgctccggcgag
ccgctggagttgtga
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