Rhodothermus marinus SG0.5JP17-172: Rhom172_0948
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Entry
Rhom172_0948 CDS
T01606
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03030
DNA replication
rmg03430
Mismatch repair
rmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rhom172_0948
03430 Mismatch repair
Rhom172_0948
03440 Homologous recombination
Rhom172_0948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmg03032
]
Rhom172_0948
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_0948
Enzymes [BR:
rmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rhom172_0948
DNA replication proteins [BR:
rmg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rhom172_0948
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rhom172_0948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEN72878
LinkDB
All DBs
Position
complement(1074373..1077930)
Genome browser
AA seq
1185 aa
AA seq
DB search
MHRFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGI
QPIIGCEFYLTPASRHDRNERTRYHQVLLAKNETGYRNLIKLSSLSYLEGYYYKPRIDHE
LLTQYHEGLIATTCCLQGEIPQTILHKGEEAARRLFEWYLELFGEDYYIEIQDHGLPEQK
KVNAILLRWAQEYGVKVIATNDVHYVDRADFEPHDVLLCLQTGKDMSDPSRLRFDNDQFY
LKSPAEMRQALLADIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEYNGDMDA
YLRDLVFEGGRRRYGDPLPHDVVERLEHELAIIKKMGFAGYFLIVQDFTTAARRLGVRVG
PGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDIDFDDRGRGRVIDYVV
QKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPDGPKVTLAQAYEEVP
ELRALKESSDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVSDYVPVAVAKGKDNDT
VTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKENHGVEIDLDQIPLDDPKTFELF
QRGETVAIFQFESEGMREWMRKLKPTSIDDLIAMNALYRPGPMDLIPNYIARKHGLEPVE
YPHPLLEPVLKNTYGIPVYQEQVMEMARVIAGYTLGQADLLRRAMGKKRAEEMKRQREIF
REGAARLHGISTEKADEIFDMMEKFAGYGFNKSHSAAYSIVAYQTAYLKANYPAEFMAAA
MTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVEDGRIRFGLGAIKGVGLGAIE
AILKVREKHGPFQTIFDLVRHLDLRVVNKKVLESLARAGALDELEGHRAQLVEAIDLAVQ
YAQKVQADRMAGQASLFGESGTRTALPPPNLPVVPPWSRARCLKEERELIGFYVTGHPLE
AYRAEVNAFATTTLAELSRTLEEADVPRNGSANGHANGTANGHAYRPARPRHRICGIITE
VQRRIGRNGRPLAFASIEDFTGQGELVIFSSVLERVMPYLEVDAVVLVEGQVEVRGGSVK
ILVDELWPMWKVRDELVEALVVQLDLEQVRPEQLDRFHALCREHTGRCKLYFDLLNPELP
GGRQRLLSRRCLVELNDTLMQQTLRLFGAEAIRLESRRLSAPVRS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgcttcagccatctgcactgccacacccagtattcgctccttgacggcgccgcc
cgcattcagacgctgctggaacgggctgccgaatacgaaatcgaagccgtcgccatcacc
gaccacggcaatctgttcggcgtgccggagttctaccgcaccgccgaaaagatcggcatc
cagccgatcatcggctgcgagttttacctgacgcccgccagccgccacgaccgcaacgag
cgcacccgctaccatcaggtgctgctcgccaaaaacgaaaccggctaccgcaacctgatc
aagctctcctccctctcctacctggaaggttactattacaaaccgcgcatcgaccacgag
ctgctcacgcagtatcacgaagggctgatcgccaccacctgctgcctgcagggtgagatt
ccgcagacgatcctgcacaagggtgaagaggccgcccgcaggcttttcgagtggtatctg
gaactgttcggcgaggattattacatcgaaatccaggatcacgggctgcccgagcagaag
aaagtcaatgccattctgctccggtgggcgcaggaatacggcgtcaaggtgatcgcgacg
aacgacgtgcactacgtcgatcgcgccgacttcgagccgcacgacgtgctgctctgcctg
cagacgggcaaggacatgtcggatccgagccggctgcgtttcgacaacgaccagttctac
ctgaaaagtccggccgaaatgcgccaggcgttgctggccgacattgagccgcgcctggtc
gacgagatgatggccaacaccggcgaggtggccgacaaatgccgctttcagcttcccacc
ggcaagctgctcatgccgcattacccgatcccgcccgagtacaacggcgacatggacgcc
tacctgcgggatctggtcttcgaagggggccgccgtcgctacggcgatccgctcccgcac
gacgtggtcgagcggctggagcacgaattggccattatcaagaagatgggctttgccggc
tacttcctgatcgtgcaggacttcactacggccgcccgtcggctcggcgtgcgcgtcggc
cccggtcgcggttcggcggccggtagtgccgtggcctactgcctgggcatcacgaacatc
gacccgctcaagtacgacctgctcttcgagcgcttcctgaaccccgagcgcgtctcgatg
cccgacatcgacatcgacttcgacgaccgcggccgcggcagggtcatcgactacgtcgtg
cagaagtacggccgggagaacgtctgccagatcatcaccttcggcacgatgggcgccaag
atggctattcgcgacgtggcccgcgtgctgggcatcccgctggccgaagccgaccgcatc
gccaagctcatccccgacggcccgaaggtgacgctggcccaggcctacgaggaggtgccc
gaactccgcgccctcaaggaaagcagcgatccacagatccgcaagctgctccactacgcc
gaggtgctcgaaggctcggtgcgccacaccggcgtacacgcggccggtgtcatcatcgcg
cccggccgcgtgagcgactacgtgcccgtggccgtcgccaaaggcaaagacaacgacacg
gtcaccacccagtacgacggcaagtggatcgaggagttcgggctcctcaaaatggatttc
ctcgggctgaagacgctcaccatcctgaacgacgcgctccagctcatcaaagaaaaccac
ggcgttgagatcgacctggatcagatcccgctcgacgatccgaagacgttcgagctgttc
cagcgcggcgagacggtcgccatcttccagtttgaatccgagggcatgcgcgaatggatg
cgcaagctcaagcccacgtcgatcgacgacctgatcgcgatgaacgcgctctaccggccg
ggccccatggatctgatccccaactacatcgcccgcaagcacggcctcgaacccgtcgag
tacccccatcccctgctcgaacccgtcctgaaaaacacctacggcattccggtctaccag
gaacaggttatggaaatggcccgcgtcatcgccggctacaccctcggccaggccgacctg
ctacgccgggctatgggaaagaagcgggctgaagaaatgaaacgccagcgtgaaatcttc
cgcgaaggggcggcgcgtctgcacggcatttctaccgaaaaagccgacgaaattttcgac
atgatggagaagtttgccgggtacgggttcaacaagtcgcactcggcggcctactccatc
gtggcctatcagacggcctatctgaaggccaactacccggccgagttcatggcggcggcg
atgaccagcgaaatgggcgacacgaaaaagctggccgtggtgctcgacgaagcccgccgc
atggggctggagctgttgccgccctcgatcaaccggagccaggcgcacttcaccgtcgaa
gacggtcgcattcgcttcggtctgggtgccatcaagggcgtggggctgggcgccatcgag
gccattctcaaagtccgcgaaaagcacggcccgtttcagaccatcttcgatctggtgcgc
cacctggacctgcgcgtcgtcaacaaaaaggtgctcgagtcgctggcgcgcgccggtgcg
ctcgacgaactggaagggcaccgggcccagctcgtcgaggcgatcgacctggccgtgcag
tatgcccagaaagtacaggccgaccggatggccggacaggcctcgctctttggcgaaagc
ggcacgcgcacggccctgccgccgcccaacctgccggtggtgccgccctggtcgcgcgcc
cgctgcctgaaggaagaacgcgagctgatcggcttttacgtgacggggcacccgctcgaa
gcctatcgcgccgaggtcaatgcctttgccaccaccacgctggccgagctgtcgcgcacg
ctggaggaggcggacgtgccccgcaacggctcggccaacggacacgcaaacggaacggcg
aacggccatgcgtaccgtcccgcacgcccgcgccaccgcatctgcggcatcatcaccgag
gtgcagcggcggatcgggcgcaacggccggccgctcgcctttgcctcgatcgaagacttc
accggtcagggcgagctggtcatcttctcctcggtgctggagcgcgtcatgccctacctg
gaagtggacgccgtcgtgctggtcgaaggccaggtggaagtgcgtggcggaagcgtcaag
atcctggtggacgaactgtggcccatgtggaaggtgcgcgacgaactggtcgaggcgctg
gtggtgcagctcgatctggaacaggtgcggcccgaacaactcgaccgcttccacgcgctc
tgccgcgagcacacgggtcgctgcaaactgtacttcgacctgctcaaccccgagctgccg
ggcggccgccagcggctgctgagccggcgctgcctggtcgagctcaacgatacgctgatg
cagcagacgctgcgcctcttcggtgccgaggcgattcgcctggaaagccgccgcctgtcg
gctccggtgcgctcgtga
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