Rhodothermus marinus SG0.5JP17-172: Rhom172_1054
Help
Entry
Rhom172_1054 CDS
T01606
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rhom172_1054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmg03021
]
Rhom172_1054
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_1054
Enzymes [BR:
rmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rhom172_1054
Transcription machinery [BR:
rmg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rhom172_1054
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rhom172_1054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
DUF7489
Motif
Other DBs
NCBI-ProteinID:
AEN72984
LinkDB
All DBs
Position
1211757..1216055
Genome browser
AA seq
1432 aa
AA seq
DB search
MPQGKTLKIKRDFTSITLSLASPESILERSYGEVLKPETINYRSFKPEKDGLFCEKIFGP
VKDYECHCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHITLAVPVVHIWYFKTVPNKI
GNLLGLKSKDLEKVIYYENYIVIQPGCAEKLGVEKNQLLTEEEYYDILYQIREDNNRLDD
DDPEKFIAKIGGEAIELMLKRLDLDALSKELRFQVKTETSQQRKEEALKRLQVVEAFREA
NRKLENRPEWMVMRVIPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIDIR
APEVILRNEKRMLQEAVDSLFDNSRKANAVRSDSNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELELHQCGLPKEMAVELFKPFIIRKLIERGVVRTVKSAKRVVDRRTD
EVWDILEKVIQGRPVLLNRAPTLHRLGIQAFQPVLTEAKAIQLHPLVCTAYNADFDGDQM
AVHVPLSHEACLESMILMLSSHNILSPANGEPIAVPTQDMVLGLYYMTKAKNGVKGEGMR
FASTEEVRQAYDQGVVDLHARIKVRLKDGQMIDTTVGRVLFNEVVPDEVGFINEVLTKKN
LKTIIGRVLKATGYPRTARFLDDIKALGFEQATRAGLTFSLEDIIIPKEKELLIEEANQE
VARARQNYEMGVITDNERYNQVIDIWTRTNNRLSEILFETLKNDKDGFNPIFMMADSGAR
GSKEQIRQLGGMRGLMAKPQKSMIGSAGEIIENPIISNFKEGLSVLEYFISTHGARKGLA
DTALKTADAGYLTRRLVDVAQDVTVTMHDCGTLRGIKIGALKDNEEIVEPLADRILGRVS
LHDVYDPLTGELIVAANELIDEEKAQRIAETSIEEVEIRSVLTCEAPRGVCALCYGRNLA
TGRLVEVGESVGVVAAQSIGEPGTQLTLRTFHVGGTAARIEAESTLNAKFAGRVVFENLR
TVTYESEEGPKEVVLSRQGMIRIMDPQEEGRELWRANVPYGAELLVQEGDLVEKGQVLVT
WDPYNSVILTEVSGTVRYQDIIEGVTYREEADEQTGYREKVVIESRDRSLTPAILIELPD
GSVREYALPVRSRIQVDEGDVVQAGQVLAKLPRQTVKTRDITGGLPRVIELFEARTPSDP
AIVSEIEGYVEYGARKRGAQEVIVTSPDGSESRTYLIPLSKYILVHPGDYVQAGQQLSDG
QVSPQDILRILGPRKVQEYLVNEIQGVYRLQGVSINDKHIEVIVRQMMQKVRVTDPGDTN
LLEGDLIDRYTLDRINDKLYDCFVVVDSGDSDLKVGDIIDRRRLREVNSEMKRRDLRPVE
VREAQPAVAEPVLLGITQAALSTDSFISAASFQETTKVLSEAAIAAKTDPLYGLKENVIV
GHLIPAGTGQRRFQHLVVGSRKELEALQAAVSESAAAGNGAGDGATESVEAS
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagggaagacgctcaagatcaagcgcgacttcaccagcatcacgctgagcctg
gcttcgccggaaagcatcctcgaacgctcctacggcgaagtcctcaagcccgaaacgatc
aactaccggtcgttcaagccggagaaggacggcctgttctgcgaaaagatcttcgggccg
gtcaaggactacgagtgccactgcgggaagtacaagcgcatccgctaccggggcatcgtc
tgcgaccgctgtggcgtcgaggtgaccgaaaagaaggtgcgccgtgagcggatgggccac
atcacgctggccgtcccggtcgtccatatctggtacttcaagaccgtcccgaacaagatc
ggcaacctgctcgggctgaagtcgaaggacctggaaaaggtcatctactacgagaactac
atcgtcattcagcccggctgcgccgagaagctcggggtggagaagaaccagctcctcacc
gaagaggagtattacgacatcctctaccagatccgggaggacaacaaccgcctcgacgac
gacgatccggagaagttcatcgccaagatcggcggtgaggccatcgagctgatgctcaag
cggctggacctggacgcgctctccaaggagctgcgcttccaggtcaagaccgagacgagc
cagcagcgcaaggaagaggcgctcaagcggctgcaggtcgtcgaggctttccgcgaggcg
aaccggaagctggagaaccggcccgagtggatggtcatgcgggtcattccggtgattccg
ccggagctgcgcccgctggtgccgctcgaaggcggccggtttgccacgagcgacctgaac
gacctctaccggcgcgtgatcatccgcaacaaccgcctcaagcggctgatcgacatccgg
gcgcccgaggtcatcctgcgcaacgaaaagcgcatgctgcaggaggctgtcgactcgctc
ttcgacaactcgcgcaaggcgaacgccgtgcgcagcgactcgaaccgggccctgaagtcg
ctttccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggtaagcgc
gtcgactactccgggcgctcggtgatcgtggtcgggccggagctcgaactgcaccagtgc
ggcctgcccaaagagatggccgtcgagctcttcaagcccttcatcatccgcaagctcatt
gagcggggcgtggtgcggacggtcaagagcgccaagcgcgtggtggaccgtcgcaccgac
gaggtctgggacatcctggagaaggtcatccaggggcggcccgtcctgctcaaccgcgcg
ccgacgctgcaccggctgggtatccaggccttccagcccgtgctgaccgaggcgaaggcc
atccagctgcacccgctggtctgtacggcctacaacgccgacttcgacggcgaccagatg
gccgtgcacgtgccgctctcgcacgaggcctgcctggagagcatgatcctgatgctctcc
agccacaacatcctcagcccggccaacggcgagcccatcgccgtgcccacgcaggacatg
gtgctgggcctctactacatgaccaaggccaaaaatggcgtcaagggcgaggggatgcgc
tttgccagcaccgaagaggtgcgccaggcctacgaccagggggtggtcgatctgcacgcg
cggatcaaggtccgcctcaaggacggccagatgatcgacacgaccgtcggccgcgttctc
ttcaacgaggtcgtgcccgacgaggtgggcttcatcaacgaagtgctcaccaagaagaac
ctcaagacgatcatcggccgcgtgctcaaggccacgggctatccgcggacggcccgcttc
ctggacgacatcaaggcgctgggcttcgagcaggcgaccagagccggcctgaccttctcg
ctcgaagatatcatcattccgaaggaaaaagaactgctcatcgaagaggccaaccaggag
gtggcccgggcgcgtcagaactacgagatgggtgtcatcaccgacaacgaacgctacaac
caggtgatcgacatctggacgcgcacgaacaaccgcctctcggagatcctcttcgagacg
cttaagaacgacaaagacggcttcaaccccatcttcatgatggccgactcgggcgcgcgt
ggctcgaaagaacagatccgccagctcggcggcatgcgcggcctgatggccaagccgcag
aagagcatgatcgggtcggctggtgagatcatcgaaaacccgatcatctcgaacttcaag
gaagggctctccgtgctcgagtacttcatctcgacgcacggcgcccgtaaggggctggcc
gacacggcgctcaagacggccgacgccggttacctgacgcgccgcctggtcgatgtcgcc
caggacgtgaccgtcacgatgcacgactgtggcacgctgcgcggcatcaagatcggcgcg
ctcaaggacaacgaggagatcgtcgagccgctggccgaccgcattctcgggcgcgtgtcg
ctgcacgacgtgtacgacccgctcacgggcgagctgatcgtggcggccaacgagctgatc
gacgaagaaaaggcgcagcgcatcgccgagacctctatcgaagaggtggagatccgctcg
gtgctcacctgcgaggcgccgcgtggtgtatgcgccctctgctacggccgcaacctggcc
accggccgcctggtggaggtcggcgagtccgtcggcgtggtggcggcccagtcgatcggc
gaaccgggtacgcagctgacgctgcggaccttccacgtcggtggtacggccgcccgtatc
gaggccgaaagcacgctcaacgcgaagtttgccggtcgcgtggtcttcgaaaacctgcgg
accgtcacctacgaatcggaggaagggccgaaggaggtcgtgctctcccgtcagggcatg
atccgcatcatggatccgcaggaggaaggccgcgaactctggcgggcgaacgtaccttac
ggggccgaactgctcgtgcaggaaggcgacttggtcgaaaaaggccaggtgctggtcacc
tgggacccctacaacagcgtgatcctgaccgaggtcagcggtacggtccgctaccaggac
atcatcgaaggggtcacctaccgcgaagaggccgacgagcagaccggctaccgcgagaaa
gtcgtcatcgaaagccgcgaccgctcgctcacgccggctattctgatcgagctacccgac
ggctcggtgcgtgagtacgcgctgcccgtgcgctcgcgcatccaggtggacgagggcgat
gtggtgcaggccggtcaggtgctggccaagctgccgcgccagacggtcaagacgcgcgac
atcacgggcggtctaccgcgcgtgatcgagctgttcgaggcgcgcacgccctccgatccg
gccatcgtttcggagatcgaaggatacgtggagtacggcgcccggaagcgtggggcccag
gaggtgatcgtcaccagccccgacggctccgagtcgcgcacctacctgatcccgcttagc
aagtacatcctggtgcatccgggcgactacgtgcaggcggggcagcagctgtcggacggt
caggtgtcgccgcaggacatcctgcgcatcctgggtccgcggaaagtccaggagtacctg
gtgaacgagatccagggggtctaccgcctgcagggcgtgtcgatcaacgacaagcacatc
gaggtgatcgtgcgccagatgatgcagaaggtgcgcgtcaccgatccgggcgacacgaac
ctgctcgagggcgacctgatcgaccgctacacgctggaccgaatcaacgacaagctctac
gactgcttcgtcgtggtcgattcgggcgactcggatctgaaggtgggcgacatcatcgac
cggcggcgcctgcgcgaggtgaactccgagatgaagcggcgcgacctgcgcccggtggag
gtgcgcgaggcgcagcccgccgtggccgagccggtgctgctgggcatcacgcaggcggcg
ctttcgaccgactcgttcatctcggccgcttcgttccaggagaccaccaaggtgctctcc
gaggcggccatcgcggcgaagaccgaccccctctacggtctgaaggagaacgtgatcgtc
ggtcacctgattccggccggtaccggtcagcgccgcttccagcacctggtcgtcggctcg
cgcaaggagctggaggcgctgcaggcggccgtcagcgagagcgccgcggccggcaacggc
gccggcgacggagcgaccgaatcggtcgaagcctcctga
DBGET
integrated database retrieval system
