Rhodothermus marinus SG0.5JP17-172: Rhom172_1215
Help
Entry
Rhom172_1215 CDS
T01606
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmg03016
]
Rhom172_1215
Enzymes [BR:
rmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Rhom172_1215
Transfer RNA biogenesis [BR:
rmg03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Rhom172_1215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AEN73142
LinkDB
All DBs
Position
complement(1397471..1398007)
Genome browser
AA seq
178 aa
AA seq
DB search
MRLFVALELPEDHRRRLYALRDPSWKARWATPDQFHLTLRFLGPVEEDRLPELTRTLAEI
EAPAFELAPRGLMVLPSLTRPRVLAAAVGPVPELHTLQAEIERRVVELGFTPENRPFRPH
ITLARLKQVPTAAVRSFLQRHRDFALTPFPVRAFHLYESHLHPDGARYEMLHRFPLQS
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtctgtttgttgcactggaactaccggaagatcatcgccgccggctctatgccctg
cgcgatccgtcctggaaagcacgctgggccacgccggaccagtttcacctgacgttgcgc
tttctgggtcccgtcgaggaagaccggctgcccgagctgacccggacgctggccgagatc
gaagcaccggcgttcgaactggcgccccggggcctgatggtcctgccttccctgacccgt
ccgcgcgtgctggcggcggccgtcggtccggtgccagaactgcacacgctgcaggccgaa
atcgaacggcgcgtggtcgagctgggttttaccccggagaatcggccgttccggccgcac
atcacgctggcccgcctgaagcaggtcccgaccgccgccgtacggtcgttcctgcagcga
catcgcgactttgcgctgacgccgtttccggtgcgggcctttcatctgtacgaaagccat
ctgcatcccgatggggcacgctatgagatgcttcaccgctttccgcttcagtcttaa
DBGET
integrated database retrieval system
