Rhodothermus marinus SG0.5JP17-172: Rhom172_1285
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Entry
Rhom172_1285 CDS
T01606
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03030
DNA replication
rmg03430
Mismatch repair
rmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rhom172_1285
03430 Mismatch repair
Rhom172_1285
03440 Homologous recombination
Rhom172_1285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmg03032
]
Rhom172_1285
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_1285
Enzymes [BR:
rmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rhom172_1285
DNA replication proteins [BR:
rmg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rhom172_1285
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rhom172_1285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
DUF7508
ComGF
Motif
Other DBs
NCBI-ProteinID:
AEN73212
LinkDB
All DBs
Position
1473903..1475600
Genome browser
AA seq
565 aa
AA seq
DB search
MQLDAVSFVVVDTETTGSGPDDRIIELAAVRVQGGRLVDRFATLINPGRSVPPFITRLTG
ITTAMLVGRPTADEVLPDFLDFLGDGVLVAHNLAFDRKMLEAELRRLGLPWPGNPALCTL
RLARRLLPGLPAKGLDGLIRFYQIPVENRHRALGDAEATAHVLLRLLDEARRQHGIDTLE
ALLTFQQQRYPQYKNASPLVRLRETLLPRLPEAPGVYLFRDEQGRLLYVGKARNLQARVR
QHLTAVEAHPPRLRQMVSEIRQIEWHVTATELEALLEESRLIKQHQPRYNRLQRRYRTRP
FIRLALHTTPPVLSLASVLLNDGAEYYGPLPGRRQGRRALEALQEIFRLPRQNGHLVLTG
RCPFAGGELCTNACADGEAEVAACVRRLLRGGGTHPLAWLEAQMRAAAARLEFEAAARYR
DQHRLLARLLERPLLAEASVLEREAVVLVREAPDRLACCLVQAGRPVAVRALPFPPDRDA
IDALVVWVHEHLAAERPPAVYHHAETDAMQLLAHWMHLHRGRLRLLRRRPDEPMASFSRR
LRHGLRHFIPDQTEPDASGASEGGA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcgacgccgtttcgttcgtcgtcgtcgataccgagacgacaggctccgggcct
gacgatcggatcatcgaactggccgccgtgcgggtgcagggcggccgcctcgtggatcgc
ttcgccacgctcatcaaccccggccgctcggtgccacccttcatcacgcgcctgaccggc
atcaccacggccatgctggtgggcaggcccacggccgacgaggtgcttccggactttctg
gacttcctgggcgatggcgtgctggtggcacacaacctggccttcgaccgcaaaatgctg
gaggccgagctccggcgactcggtctgccctggcccggcaatccggcgctgtgtacgctc
aggctggcgcgccggctgctgcccggcctgcccgcaaaagggctcgacggcctgattcgc
ttctatcagattcctgtggaaaatcgacatcgggctttgggcgacgccgaggcgaccgcc
cacgtgctgctacgcctgctggacgaagcacgccggcagcacgggatcgacacgctggag
gcgctgctgaccttccagcagcagcgctatccgcagtacaaaaacgcaagtccgctggtg
cggctgcgcgaaacgctgctgccgcggctgcccgaagcgcccggtgtctatctgttccgg
gatgaacaggggcgactgctgtatgtgggcaaggcccgcaacctgcaggcccgcgtgcgt
cagcacctgacggccgtcgaggcccatccaccccgcttgcgccagatggtaagcgagatt
cgccagatcgaatggcacgtgacggccaccgaactggaagccctgctggaagaatcccgg
ctcatcaaacagcaccagcctcgctacaaccggttgcagcgtcgctaccgcacccgaccg
ttcattcggctggcgctgcacacaactccgcccgtgctttcgcttgcgtccgtgctgctc
aacgacggcgccgagtactacggtccgctgccggggcggcgtcagggtcggcgtgcgctg
gaagccctgcaggagatttttcggctgccccgccagaatggccacctggtgctgacgggt
cgttgtccatttgccggcggcgagctctgcacgaatgcctgcgccgacggggaggccgaa
gtggccgcctgtgtacgccggttgctccggggagggggtacgcatccgcttgcgtggctt
gaggcgcagatgcgggcggcggccgcccggctggaattcgaggcggccgcccgctatcgg
gaccagcaccgattgctggcccgcctgctggagcggccgctgctggccgaggcgtccgtg
ctggaacgcgaagccgtggtgctcgtgcgcgaggcacccgaccggctggcctgttgcctg
gtgcaggcgggccgcccggtggccgtccgcgcgctgccgtttccgccggaccgcgacgcc
atcgacgcgctcgtcgtctgggttcacgaacaccttgctgcggaacggccacccgcggtc
tatcatcacgccgagaccgacgccatgcaactcctggcgcactggatgcatcttcaccgc
ggacgactccggctgctgcgtcgccgtccggatgagcccatggcatccttcagccgccgc
ctccgccacggtttacgccactttatccctgatcagacagaacctgacgcttctggcgca
tcggagggcggggcatag
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