Rhodothermus marinus SG0.5JP17-172: Rhom172_1405
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Entry
Rhom172_1405 CDS
T01606
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03030
DNA replication
rmg03410
Base excision repair
rmg03420
Nucleotide excision repair
rmg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rhom172_1405
03410 Base excision repair
Rhom172_1405
03420 Nucleotide excision repair
Rhom172_1405
03440 Homologous recombination
Rhom172_1405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmg03032
]
Rhom172_1405
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_1405
Enzymes [BR:
rmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rhom172_1405
DNA replication proteins [BR:
rmg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rhom172_1405
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rhom172_1405
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rhom172_1405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEN73330
LinkDB
All DBs
Position
complement(1609461..1612298)
Genome browser
AA seq
945 aa
AA seq
DB search
MQKEDQLSLFPEQEVDRPPSDMQRLYLIDAMALAYRAHYVFISRPLVNSKGQNTSAAYGF
TTSLLKLIEDHGMDYMAVVFDAGGEEGTFREELYEEYKAHREPPPEDLLANLPWIKEIVR
ALDIPVIEEPGVEADDVIGTLARRAEAHGIDVVIVSPDKDFLQLLSPHISIYKPARRGET
FDLITIETFRETYGLEPHQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLA
HAEEVKGKRAREGLLNHREEALLSKRLVTIRTDVPLRIRWETFHRARPDLPRLLQIFQEL
EFDSLVRRIREGDLAGIVNGEAALAEAPEAETEPEFDFGPYEPLQVYDPEKADYRIVRNR
QQLDELVTQLDGLERLAIDTETTSTEAMWASLVGIAFSWEKGQGYYVPTPLPDGTPTEAV
VERLAPILRGAQLKIGQNLKYDLVVLARHGVEVPPPYFDTMVAHYLIAPEEPHNLDVLAR
QYLRYQMVSITELIGSGRDQKSMRDVSIDEVGPYACEDTDIALQLADVLAAELDRLGLRH
IAEEMEFPLIEVLADMERTGICIDRAVLREIGKQLEEELHELEAKIYEVAGVEFNIGSPQ
QLAEVLFKKLGLKPRARTSTGRPSTKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGL
EPLIHPETGRIHTTFNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSA
DYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGI
PYGISAWGLAQRLRCSTREAQELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRY
VPNINSRNRAERSMAERIAVNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDEL
VFEMPPEEVEPVRRLVEQEMKQALPLEGVPIEVDIGVGDNWLDAH
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaagaagaccagctcagtctgttcccggagcaggaagtcgatcggccgccgtcc
gatatgcagcgcctgtatctgatcgacgccatggcgctggcctatcgggcgcactacgtg
ttcatcagccggccgcttgtcaattcgaagggccagaatacctcggccgcctacggcttt
acgacctcgctgctgaagttgatcgaagaccatggcatggactacatggccgtggtcttc
gacgccggtggggaggaggggacctttcgcgaagaactctacgaggaatacaaggcccac
cgggagccgcccccggaagatctgctggccaatctgccctggatcaaggagatcgtgcgg
gcgctggacattcccgtcatcgaggaaccgggcgtcgaggccgacgacgtgatcggcaca
ctggcccgtcgggccgaagcgcacggcatcgacgtggtgatcgtctcgcccgacaaagac
tttttgcaactgctgagcccgcacatttccatttacaaaccggcgcggcgtggcgaaacc
ttcgacctgatcaccatcgagaccttccgggagacctacgggctggagccgcaccagttc
atcgacgtgctggccctcatgggcgatccgagcgacaacgtgccgggtgtgccgggcatc
ggcgaaaagactgccgtgcagctcattcagcagtacggctcggtggaaaacctgctggcc
catgccgaggaggtgaaagggaagcgcgcccgcgaagggctgctgaaccaccgcgaagaa
gcgctcctctcgaagcggctggtgacgatccgtaccgatgtgccgttgcgcattcgctgg
gagacgttccatcgcgcccggcccgatctgccgcgcctgctgcagatctttcaggagctg
gaattcgactcgctggtgcggcgcatccgggaaggtgacctggccggcatcgtgaacggc
gaagccgcgctggccgaggcgcccgaagcggagaccgagccggaattcgacttcggcccc
tacgagccgctgcaggtgtacgatccggaaaaggcggactaccggatcgtccgcaaccgc
cagcaactcgacgaactcgtgacgcagctggacggactcgagcggctggccatcgacacg
gagacgacctcgaccgaggccatgtgggcctcgctggtgggcattgccttttcctgggag
aaaggacagggctactacgtgcccacgccgctgccggacggtacgccgaccgaggcggtc
gtcgaacggctggcaccgatcctccgaggggcgcaactcaaaatcggccagaacctgaag
tacgatctggtggtgctggcgcggcatggcgtcgaagtcccgcccccgtacttcgacacg
atggtggcgcactacctgatcgcgcccgaagagccgcacaacctggacgtactggcccgc
cagtaccttcgctaccagatggtctccattacggagctgatcggctcaggccgtgaccag
aaatctatgcgcgacgtgtcgatcgacgaggtggggccctacgcctgtgaagacaccgac
attgcgctgcaactggccgacgtgctggccgccgaactggaccggctcgggctccggcat
atcgccgaggagatggagtttccgctcatcgaggtgctggccgacatggagcggacgggc
atctgcatcgatcgggcggtgctccgggaaatcgggaagcaactcgaagaagagctccac
gagctggaggcgaagatctacgaagtggccggcgtcgaattcaacatcggctcgccgcag
caactggccgaggtgctcttcaaaaagctcggcctgaagccccgggcgcgcaccagcacc
ggcagaccctccacgaaagaaagcgtgctgcaggagctggccacgcagcatccgctcccc
ggcctgatcctggactggcggcatctggccaagctcaaaagcacctacgtggacggtctc
gaaccgctcattcatccagagaccggccgcatccacaccacgttcaaccagacggtaacg
gccaccgggcggctttcctcgagcaacccgaacctgcagaacatcccggtacgcaccgag
atggggcgggagatccggcgggcgtttgtgccgcgtccgggctggaagctgctttcggcc
gactacgtccagatcgagcttcgcattctggccgcgctgagcggcgacgaggcgcttcgc
cgggcttttctggagggacaggacatccatacggctacggcagcccgcgtcttcaaggtg
ccgcccgagcaggtaacgcccgagcagcgccgccgcgccaagatggtcaactacggtatt
ccctacgggatctcggcctggggactggctcagcgccttcgctgctccacgcgcgaggcg
caggagcttatcgaagaatatcagcgggcgtttcccggggtgacgcgctacctgcaccgc
gtcgtcgaagaagcccgccagaagggctatgtcgaaacccttctgggccgccggcgctac
gtaccgaacatcaactcgcgtaaccgggccgagcgctcgatggccgaacgcatcgccgtg
aacatgcccattcagggcacgcaggccgatatgatcaagctggccatggtgcacatctac
caccggctgcagcgggaaggctaccgggccaagatgttgctccaggtgcacgacgagctg
gtcttcgagatgccacccgaagaggtggagccggtgcgacggctggtcgagcaggagatg
aagcaggccctgccgctggagggcgtgccgatcgaggtggacatcggggtcggcgacaac
tggctggacgcccactga
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