Rhodothermus marinus SG0.5JP17-172: Rhom172_1820
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Entry
Rhom172_1820 CDS
T01606
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rhom172_1820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmg03019
]
Rhom172_1820
03400 DNA repair and recombination proteins [BR:
rmg03400
]
Rhom172_1820
Enzymes [BR:
rmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rhom172_1820
Messenger RNA biogenesis [BR:
rmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rhom172_1820
DNA repair and recombination proteins [BR:
rmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rhom172_1820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEN73734
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All DBs
Position
2084916..2086670
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AA seq
584 aa
AA seq
DB search
MSDAAADRYETARALLRRYWRHDAFRPGQWEIIQAVLQGQDVLAVLPTGGGKSVCYQLPA
LLLDGLTLVVSPLLALIEDQVARLRARGIPAAFLHGHLSTHAAEQCWIDAEHGAYRLLYV
TPEQLTTTRFEARAGRLHVALLAVDEAHCVSEWGPQFRPAYLHLPEARRQLGDPPLLALT
ATATPRVRQDIVEKLALRTPRIVVRGFDRPNLVWSVFETADKAERVRAVLRGVPGPGILY
CATRRSAERWTETLRRLGVEAVCYHGGLSAADRAAASRAWREGQARVIAATSAFGMGIDR
ADVRFVLHAELPPSLEAYYQEAGRAGRDGQKAYAVLLFQEEDVALQRRLITLSYPGRDVV
ARIYEVACSLAQVPVGIRPNHPVLFDAERIARIAGVPVGAVRHTLELLTRQEIWEPIWLP
AHYVLLRLRGTPNDFRRFAAGTNNPRLARFVEALLRAIPADAFSTWWPVSLRRLSRRTGV
ERERLLRGLDFLRERALLDWLSSDHAHLVRFRIARPQRLILDDRLLRQAREQAEARLEAL
VRYARTSTCRRHFLLTYFGESAPERCNACDVCLKRSGRRNSPDL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgccgcggccgatcggtacgagaccgcccgcgcgctgctccgccgctactgg
cgacacgacgcgtttcgtccgggccagtgggagatcatccaggcggtcttgcagggacag
gatgtgctggccgtgctcccgaccggcggcggaaagtcggtctgctaccagctcccggcc
ctgctgctggacggcctgacgctggtcgtctcgccgctgcttgcgctcatcgaagaccag
gtggcccggctccgggcacggggcatcccggccgcctttctgcacggacatctctcgacg
cacgcggccgagcagtgctggatcgatgcggagcacggcgcctatcggctgctttacgta
actcccgaacagctcaccaccacccgcttcgaagcacgggccgggcggctgcacgtggcg
ctgctggccgtcgacgaggcgcactgcgtcagcgaatggggtccgcaattccgtcccgcc
tacctgcacctgcccgaggcccgtcggcaactgggcgatccgccgctgctggcgctcacg
gccacagccaccccccgcgtgcgtcaggacatcgtcgaaaaactggcgctgcgcaccccc
cggatcgtcgtgcgcggcttcgaccggcccaacctggtctggtccgtgttcgaaaccgcc
gacaaagcagaacgcgtccgggccgtactccggggcgtgcccggtccgggcatcctgtac
tgcgccacgcggcgaagcgccgaacgctggaccgagacgctgcgtcggctgggcgtcgag
gcggtctgctaccatggcggactgtcggcggccgatcgggcggccgcctcccgggcctgg
cgggagggacaggcccgcgtgatagccgccaccagcgccttcggcatgggcatcgaccgg
gcggacgtccgcttcgttctgcacgccgaactcccgccatcgctcgaagcctactaccag
gaggccggtcgggccggacgcgacggccagaaagcctacgccgtgctgctctttcaggag
gaggacgtcgcgctccaacggcggctgatcaccctgagctatccggggcgcgacgtggtg
gcccgcatctacgaggtggcctgcagcctggcccaggtgcccgtgggcatccgtccgaac
catcccgtgctgttcgacgccgaacgcatcgcccgcatcgcgggcgtcccggtgggtgct
gtacgccacacgctggaactgctcacccgccaggagatctgggagccgatctggctaccc
gcccattacgtgctgctgcgtctgcgcggcacgccgaacgactttcggcgctttgcggcg
ggcacaaacaacccgcggctggcccgcttcgtcgaagcgctgctgcgtgcgatcccggcc
gacgccttctccacctggtggccggtcagcctgcgccggctgagccgccgcaccggcgtg
gaacgcgaacggctgctccgcggcctggattttctgcgggaacgtgcgctgctcgactgg
ctctcgtccgaccacgcccatctggtccgcttcaggatcgcccggccgcagcggctgatc
ctcgacgaccgcctgttgcgccaggcccgggagcaagccgaggcgcgcctggaggcactc
gtccgctatgcccgcacctcgacctgccgtcgccactttctgctgacctacttcggcgaa
tcggcgcccgagcggtgcaacgcctgcgacgtgtgcctgaagcgatccggacgtcggaat
tcccccgacctgtag
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