Rhodothermus marinus SG0.5JP17-172: Rhom172_2125
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Entry
Rhom172_2125 CDS
T01606
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg02020
Two-component system
rmg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Rhom172_2125
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rhom172_2125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmg03021
]
Rhom172_2125
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
rmg02035
]
Rhom172_2125
Transcription machinery [BR:
rmg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rhom172_2125
Bacterial motility proteins [BR:
rmg02035
]
Flagellar system
Flagellar assembly proteins
Stator
Rhom172_2125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_3
UPF0122
HTH_23
PCI
Rv2175c_wHTH
MarR_2
Sigma70_ECF
RecG_N
DUF1489
HTH_38
Xre-like-HTH
KORA
HTH_37
Phage_antitermQ
Motif
Other DBs
NCBI-ProteinID:
AEN74027
LinkDB
All DBs
Position
2408696..2409457
Genome browser
AA seq
253 aa
AA seq
DB search
MKYDLQRLVEQYVADPSSANREAVVLAAVPLVRSMVGRLSVPDHPLVTREDLENVGLMGL
LQALDSYDPERGTPFVSYAYGRIRGALVDYLRSIDALPRERRRKLAELQQAIETLRQTLG
GEPDDQDVADYLGISLQEYYALLTDAQRRFALSLQETVGEDGDQSVLETIPNEDAEKQFE
EIDRASLIEYVTKLTQRLPEREQNILALYYYENLTLREIAQLLGLTEARISQILGKTLLT
LRTELQRVRSRVA
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgacctgcaacgcctcgttgagcagtatgtggccgatccttcgtcggccaac
cgcgaggccgtcgtgctggcagccgtcccgctggtgcgctccatggtaggacgcctgagt
gtgcccgatcacccgctcgtcacccgtgaggatctggaaaacgtgggcctcatggggctg
cttcaggcactcgacagctacgatccggaacgcggcacccccttcgtttcctatgcttac
gggcgtatccgcggagctctcgtcgattacctgcgctcgatcgacgccctgccccgcgag
cgccgccgcaaacttgccgaactgcaacaggccatcgaaacgctccgccagacgctcggc
ggcgaacccgacgatcaggatgtggccgactacctcggcatctcccttcaggaatactac
gccctgctgaccgacgcccagcggcgctttgcgctttccctgcaggaaaccgtcggggaa
gacggcgatcagagcgtgctggagaccatccccaacgaagacgctgaaaagcaattcgag
gaaatcgaccgcgcttctctgatcgagtacgttacgaagctcacccagcgccttcccgaa
cgcgagcagaacattctagccctctactactacgaaaacctgacgctgcgcgaaatcgcc
cagctgctcggactcaccgaagcgcgcatctcgcagatcctggggaaaacgttgctgacg
ttgcgcaccgagctgcagcgcgtccgctcccgcgtggcctga
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