Rhodothermus marinus SG0.5JP17-172: Rhom172_2309
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Entry
Rhom172_2309 CDS
T01606
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rhom172_2309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmg03021
]
Rhom172_2309
03019 Messenger RNA biogenesis [BR:
rmg03019
]
Rhom172_2309
Transcription machinery [BR:
rmg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Rhom172_2309
Messenger RNA biogenesis [BR:
rmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Rhom172_2309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
AAA_25
OB_RNB
AAA
ATPase_2
Packaging_FI
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEN74204
LinkDB
All DBs
Position
2633904..2635460
Genome browser
AA seq
518 aa
AA seq
DB search
MKISELQAKKISELRELARELGLTGYSTLRKQDLIYRILEAQAEAEAGRPNGAARRAATT
QESTDVAPKEEVAETVSEDAGDETVEAEAPAAETQAEATREDRRAWRERRGRRGRVDMRY
ADWDERRRRVYEGRPAYMANYDPGKTELEGMIIKSGVLEIMPDGYGFLRSPDYNYLPGPD
DIYVSPSQIKRFSLRLGDTIEGLVRPPKEGERFFALIQVHKVNGRPPEEMEERQSFDYLT
PLYPTEQIRLETSPNEYSTRILDLFAPIGKGQRGLIVAPPKTGKTILLQKIANAITTNHP
EIYLIILLVDERPEEVTDMERNVKAEVISSTFDQDPERHVEVADIVLEKAKRLVEAKQDV
VILLDSITRLARAHNAVTPSTGKTLSGGIEAGALRGPKRFFGAARNVEEGGSLTIIGTAL
IETGSRMDEVIFEEFKGTGNMELVLDRQLADRRIFPAIHLIKSGTRREELLIPEAKLHRI
WLLRKILADMDPVEAMIFLLEKMRGTRSNDEFLVTMNS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaagatctccgaacttcaggccaagaaaatcagcgaattgcgcgagctggcccgcgaa
ctgggcctcacgggatactcgacgctgcgcaaacaggatctgatctatcgcattctggaa
gcccaggcggaagcggaagccggacgcccgaacggagcggctcgccgggccgccacgacg
caggaatccaccgacgtggccccgaaggaagaagtggccgaaacggtgagcgaggacgcc
ggtgacgaaaccgtcgaggccgaagctccggcggcggaaacgcaggccgaagccacccgc
gaagatcggcgcgcctggcgcgagcgtcggggtcggcgcggacgcgtcgacatgcgctat
gccgactgggacgagcgccggcgccgcgtctatgagggacggcccgcctacatggccaat
tacgaccccggcaagaccgagctggagggcatgatcatcaaaagcggcgtgctggagatc
atgcccgacggctacggcttcctgcgctcgcccgattacaactacctgcccggtcccgac
gacatctacgtatcgccctcgcagatcaagcgcttcagcctgcgcctgggcgacacgatc
gaagggctggtgcggccgcccaaagaaggcgagcgcttcttcgcgttgattcaggtgcat
aaggtcaacggccggccgcccgaggaaatggaagagcggcagagcttcgactacctcacg
ccgctctatccgaccgagcagatccggctggagacttcgcccaacgaatacagcacgcgc
attctggatctgtttgcaccgatcggaaagggccagcgcggactgatcgtggccccgccc
aagacgggcaagaccatcctgctgcagaagatcgccaacgccatcacgacgaaccacccg
gagatctacctgatcattctgctggtggacgagcggcccgaggaggtcaccgacatggag
cgaaacgtcaaggccgaagtgatctcctcgacgttcgaccaggacccggagcggcacgtc
gaggtggccgacatcgtgctggaaaaggcaaagcggctggtcgaggccaaacaggacgtg
gtgatcctgctcgactcgatcacgcgcctggcccgcgcgcacaacgcggtcacgcccagc
accggtaagacgctctcgggtggtatcgaagccggcgcgctgcgcggtcccaagcggttc
ttcggcgcggcccgtaacgtcgaagagggcggctcgctgacgatcatcggcacggcgctg
atcgagaccggcagccgcatggacgaggtgatcttcgaagaattcaaggggaccggcaac
atggagctggtgctcgaccggcagctggccgaccgacgcattttcccggccatccatctg
atcaagtcgggcacgcgccgcgaagagctgctcattcccgaagccaagctgcaccgcatc
tggctcctgcgcaagatcctggccgacatggatccggtcgaggccatgatcttcctgctg
gagaagatgcggggcacgcggagcaacgacgagttcctggttacgatgaactcctga
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