Rhodothermus marinus SG0.5JP17-172: Rhom172_2487
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Entry
Rhom172_2487 CDS
T01606
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rhom172_2487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmg03021
]
Rhom172_2487
03019 Messenger RNA biogenesis [BR:
rmg03019
]
Rhom172_2487
Transcription machinery [BR:
rmg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Rhom172_2487
Messenger RNA biogenesis [BR:
rmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Rhom172_2487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
S1CSD-TOTE-2
NACHT
AAA_25
Spore_III_AA
ATPase_2
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
AEN74379
LinkDB
All DBs
Position
complement(2855885..2856997)
Genome browser
AA seq
370 aa
AA seq
DB search
MSEQTFRGMLELIGDKKFGFVREFRPDLPKGKNDPFVPPPVIRRYNLRDGVLIEGTLRPG
RKGDMQVDEIHSIMGVSPEEWAKTEDFESGQIVYPDEKFNLVTGPTDYAMRVVDLAAPIG
KGQRALIVAPPRAGKTVLLKQIAAGIAKNHPEVKLVALLVDERPEEVTDFRRSTPAIVFA
SSNDREEDNHIRVSTLALEFAKRLVELKHDVVLLLDSLTRLGRTFNLYVESSGRTLSGGL
DARALQIPRRIFGAARNIEGGGSLTIIATALIETGSRMDEVIFEEFKGTGNAEIVLDREM
ADKRIFPAINLRKSGTRNEERLIGDRIEQYHRLFRALNSRPPIEAMQALLRHMQQTQSNE
ELLNSLVPVE
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacagacgtttcgtggcatgctggagctgatcggggacaaaaagtttggcttt
gtgcgagaattccgccccgatctccccaaaggcaagaacgatcccttcgtgccgccaccg
gtcatccggcgttacaacctgcgcgacggcgtgctgatcgagggcacgctgcgcccgggc
cgtaagggcgacatgcaggtggatgagatccactcgatcatgggcgtttcgcccgaggaa
tgggccaagaccgaggatttcgagtccgggcagatcgtctatccggacgagaaattcaac
ctggtcaccggcccgaccgactacgccatgcgcgtggtcgatctggccgcgccgatcggc
aagggccagcgcgcgctgatcgtggcgccgccgcgtgccggtaagacggtcctgctcaag
cagatcgcggcgggcatcgccaagaaccatccggaggtcaaactggtggcgctcctggtg
gacgagcggcccgaggaggtgaccgactttcgccgctcgacgcccgccatcgtcttcgcc
tcgtcgaacgatcgggaggaggacaaccatatccgcgtttcgacgctggcgctggagttt
gccaagcggctcgtcgagctgaagcacgacgtggtactgctgctcgactcgctcacgcgc
ctgggccgcacgttcaacctttacgtcgaaagcagcggccgcacgctttcgggcggactc
gacgcgcgggcgcttcagattccgcggcgcatcttcggtgccgcccgcaacatcgaaggc
ggcggttcgctgacgatcatcgccacggcgctcatcgagacgggcagccgcatggacgag
gtgatcttcgaagagttcaaaggcaccggcaacgccgagatcgtgctcgaccgcgagatg
gccgataagcgaatcttcccggccatcaacctgcgaaagagcggcacccgcaacgaggag
cggctcatcggcgaccggatcgagcagtatcatcggctgttccgggcgctcaactcgcgg
ccgcccatcgaggccatgcaggccctgctgcgccacatgcagcagacgcagtcgaacgaa
gagctgctcaacagcctggtgccggtggagtag
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