Rhodothermus marinus SG0.5JP17-172: Rhom172_2523
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Entry
Rhom172_2523 CDS
T01606
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmg03016
]
Rhom172_2523
Enzymes [BR:
rmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rhom172_2523
Transfer RNA biogenesis [BR:
rmg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rhom172_2523
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
HTH_RNase_II
DEDD_Tnp_IS110
HEAT_Maestro
FlxA
Motif
Other DBs
NCBI-ProteinID:
AEN74415
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Position
2888019..2889998
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AA seq
659 aa
AA seq
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MRPGTLVEYLESDQPQFALVLETRNGSVQALTPTGRRIRVPIRRIAIQHERTATAEELAE
VVRMLETQIDALQAEIDLPLLWETAREEGETFELESLAYLYFGEAGALEQAALLRALLAD
TLYFSRRGLTFSPRTPEQVEALQTAARRRREREAERRALREQLEQLLDAEADDLPEAPAA
LLDALEAYLRQKQRSELTQVLAEVVRDRDLTTREAALEILLRTGRLDASIDTFALLAGIE
PTFPPEVLAAAEALVPFEPTGDRTDFTHLPAFHIDDATTREIDDAFTVEPLPEGGWRLGI
HLADVPHFVAPDDVLDQAAQRRGLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVV
TVDASEQIRDVQLVRGQIRVAHGFTYETADAVLSGETPHELAEALQVLARLSQTLTEARL
ARGALLIRRPELKVQVDGDTITLKVIDPDTPARRMVSEWMILANAEAARWAAENELPMIY
RVQDPPDDPELQGRKLDYDPVLLASRLRGLRRTRFSTHPQPHAGLGLEAYVQITSPIRRY
ADLALQRQIVAALADAPLPYDTTRLFEVLATAEAAEREARALEQQATRYWALVWLERHAE
QTFEAIVVARRPAGYLVELQPYGLRGLLATADALTPGDRVAVRPEAIDPRRGRLRLQRA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccgggtaccctcgtcgagtatcttgaaagcgatcaaccccaatttgccctggta
ctggaaacgcgcaacggatccgtgcaggcgctgacgcccacgggccggcgcatccgggtg
ccgatccgccgcattgccatccagcatgaacgcaccgctactgccgaagagctggccgaa
gtggtgcgcatgcttgagacgcaaatcgatgcccttcaggccgaaattgacctgcccttg
ctctgggaaacggcccgtgaagaaggcgaaacctttgaactggaaagcctggcctacctc
tattttggcgaagcgggtgcgctggaacaggccgcgctgctgcgtgccctgttggccgac
acgctgtacttcagccgacgtggcctaacgttctcaccacgcactcccgagcaagtagag
gccctgcagacggccgcacgccgccgccgggagcgcgaggccgaacgccgggcgctgcgg
gagcagctcgaacaactgctcgacgccgaggccgacgacctgcccgaagcaccggccgcg
ctgctggacgcgctcgaagcctacctgcgccagaagcaacgctccgaactcacccaggtg
ctggccgaagtagtgcgcgaccgtgacctgaccacccgcgaagccgccctggagattctg
ctgcgcaccggccgcctcgacgcctcgatcgatacgttcgccctgctggccggcatcgaa
ccaaccttcccgcccgaggtgctggctgccgccgaagcgctcgtgcccttcgagccgacc
ggcgaccgcaccgacttcacgcacctgccggcctttcacatcgatgatgcgaccactcgc
gaaatcgacgacgcgtttaccgttgagcccttgccggaaggcggctggcgccttggcatt
catctggccgatgtgccgcactttgtggccccggacgatgtgctcgaccaagcggctcaa
cgccgaggcctgacccgctacctgccaaccggctccattcccatgctgcccgagcgcctg
agccatgacctggccagccttcgtcccgacgcaatccgccccacgctgagcgtggtggtg
accgtggacgcctcggagcagatccgggacgtgcagctcgtgcgtggacagatccgcgtg
gcgcatgggttcacctacgaaacggccgatgcggtgctgtccggtgaaacgccgcacgag
ctggccgaggcgctgcaggtgctggcccgcctgagccagacgctgaccgaagcccggctg
gcgcgcggcgcgctgctgatccggcgacccgagctcaaagtgcaggtggacggcgacacg
atcacgctcaaggtgatcgatcccgacacacccgcccgacgcatggtcagcgaatggatg
atcctggccaatgccgaggcggcccggtgggcggccgaaaacgagctgcccatgatctac
cgcgtgcaggatccgcccgacgatcccgagttgcagggacgcaagctggactacgacccc
gtgctgctggccagccggttgcgcgggctgcgccgcacacgcttttccacgcacccccag
cctcatgccggactcggtctggaggcctacgtgcagatcacctcgccgatccggcgctat
gccgacctggccctgcagcgtcagatcgtggctgcgctggccgacgcgccgctcccgtac
gacaccacccggctgttcgaagtgctggccaccgccgaggcggccgaacgcgaggcccgg
gcgctggaacagcaggccacccgctactgggcgctggtctggctcgaacgccacgcggag
cagaccttcgaggcgatcgtcgtggcccgtcgcccggccggctatcttgtcgagctgcag
ccctacggcctgcgcggcctgctggccacggccgatgcgctgacgcccggcgaccgtgtc
gccgtacgtcccgaagcgatcgatccccgccgcggccgcctccgcctgcaacgggcctga
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