Rhodothermus marinus SG0.5JP17-172: Rhom172_2814
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Entry
Rhom172_2814 CDS
T01606
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rmg
Rhodothermus marinus SG0.5JP17-172
Pathway
rmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rhom172_2814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmg03019
]
Rhom172_2814
03009 Ribosome biogenesis [BR:
rmg03009
]
Rhom172_2814
Enzymes [BR:
rmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rhom172_2814
Messenger RNA biogenesis [BR:
rmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rhom172_2814
Ribosome biogenesis [BR:
rmg03009
]
Prokaryotic type
rRNA helicases
Rhom172_2814
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AEN74697
LinkDB
All DBs
Position
complement(3218773..3220290)
Genome browser
AA seq
505 aa
AA seq
DB search
MAEEPVRSPYTTVIDLTRRAQQKKQEAAAVQATGAPLPEVSLAELPERMQQAARAIGWTE
LMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQALILTPTRELAR
QIFEAFEQMKAGVSGAQSLRAVLVYGGVRYGPQLKALEQGAQVVIGTPGRILDLIERGAL
RLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRARNTAMFSATIPPRVQALAREFLKDP
AYVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIELENPESAIIFANTKRDVEYLGQFL
KNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQD
PEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPLEKGTLPTPEVVAERVAE
RAVALLEDRYRETTSLDRERIARFVPLVEQLAQEEPELLAMLVDALYVQEGHRRGIRPES
EVEAPASEQNAPPGKKRRRGRRKKS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagaaccggttcgctcgccctacaccaccgtcatcgatctgacgcgacgggct
cagcagaaaaaacaggaggcggcggccgttcaggccaccggcgcgccgttgccggaagta
tcccttgcggagctgcccgaacgcatgcagcaggccgcccgcgcgatcggctggaccgag
ctgatgccggtgcagcgccgcacgttgccctacctgcttgaaggtcgcgacgtgatcgtc
cagtcgcagaccggttcgggcaaaaccggcgcctttctgctgccgctgttcgagcggctg
gacccttctcgcggacaggtgcaggcgctgattctgacgcccacgcgcgagctggcccgg
cagatctttgaagcgttcgagcagatgaaagcaggcgtatccggggcgcagtcgcttcgg
gccgtgctcgtctacggtggcgtgcgctacggtccgcagctcaaggcgctggagcagggc
gcccaggtggtgatcggcacccccggtcgcattctggacctgatcgaacgcggggcgctc
cggctgggcgcgctccaggtgctcgtcttcgacgaggccgacgagatgctctcgatgggc
ttctacccggccatgcgccagctcaagcgctacctgccacgcgcgcgcaacacggctatg
ttcagtgccacgattccgccgcgcgtgcaggcactggcccgtgagtttctgaaagatccg
gcctacgtgtcgctgagcacggatcggatcgcggccgagaccatcgagcaccgctacttc
atcgtgccgcccatggagaaagaccgggcgctcgtgcagctcatcgaactggaaaatccg
gagtcggccatcatcttcgccaacacgaagcgtgacgtcgagtacctggggcagtttctc
aaaaactatggctacaatgccgacgcgatcacgggcgacctgccgcagaaacagcgggag
cggatcatggaccggctccggaagggccagctccgcctgctggtggctaccgatgtggcg
gcgcgcggcatcgacatctcggacctgagccacgtgttcatgtacgacgtgccccaggat
cccgagtactacgtgcaccgatccggacgcaccgggcgcgtggggaaggaaggcaccacg
atcgtgctggtgacgccgctcgaagaggcgcggcttcgcgcgattgcgcgacagtacgac
attccgctcgaaaagggcacgttgcccacgcccgaggtcgtggccgagcgggtggccgaa
cgcgccgtcgcgctgctcgaagaccgctaccgcgaaacgaccagtctggaccgggagcgg
attgcgcgcttcgtgccgctggtggagcaactggcgcaggaagagccggagctgctggcc
atgctggtggatgccctctacgtgcaggaagggcaccgcagggggatccgtcccgaatcg
gaagtcgaggcgcctgcgtccgagcagaacgccccgcccgggaagaaacgtcgccgcggt
cgccggaagaagtcatga
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