Roseivivax marinus: LVO79_03405
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Entry
LVO79_03405 CDS
T08313
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rmh
Roseivivax marinus
Pathway
rmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVO79_03405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmh03019
]
LVO79_03405
Enzymes [BR:
rmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVO79_03405
Messenger RNA biogenesis [BR:
rmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVO79_03405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
Motif
Other DBs
NCBI-ProteinID:
UMA65523
LinkDB
All DBs
Position
complement(674678..675964)
Genome browser
AA seq
428 aa
AA seq
DB search
MDFDMLGLPPRLARNLEEMGITDPTPIQTKAIPEAMNGRDVMGLAQTGTGKTAAFGLPLT
SALMRMEGRPAPKTTRGLILAPTRELAKQILDNLRAYAAGTQIRVELVVGGASIRPQEQR
LGRGCDLLVATPGRLIDLLDRGSVSLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAER
QTMLFSATMPKQMTEIANAYLTDPVRIETAPPGKPADKITQSVHFIEQTEKTGLLIDMLG
KHRDESALVFARTKHGAERLMKTLDRAGFSAASVHGNKSQGQRERALRGFRAGDLRVLVA
TDVAARGIDVPEVRHVYNYDLPNVPDNYVHRIGRTARAGRDGAAVAFCAPAEMGELRDIE
KVMGKAIPVAGGEPWAGAPSEGRGKKPGGGGGRGRRRSGGGGGNGGGNGGGGGQPARNRR
PRRGRRAA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
ttggattttgacatgctggggctgccgccccgcctcgcccgcaatctcgaagagatgggc
atcaccgacccgaccccgatccagaccaaggccatccccgaggccatgaacggccgcgat
gtcatgggccttgcccagaccggaaccggcaagaccgcggccttcggtctgccgctgact
tccgcgctcatgcgtatggagggccggcccgcgcccaagaccacgcgcggactgatcctc
gcgcccacgcgggaactggcaaagcagatcctcgacaacctgcgcgcctacgccgccggc
acccagatccgggtcgaactggtcgtgggcggcgcctcgatccgtccgcaggagcaacgg
ctcggacgcggctgcgacctgctcgtcgcaacgcccggccgcctcatcgacctgctcgac
cgcggttcggtgtcgctgtcggaaacccgtttcctcgtcctcgacgaggcggaccagatg
ctcgacctcggcttcatccacgcgctgcgcaagatcgcgcctctgctgccggccgagcgt
cagaccatgctgttctcggccaccatgcccaagcagatgaccgagatcgcgaacgcctac
ctgaccgacccggtccggatcgagacagcccctcccggcaagcccgccgacaagatcacg
cagagcgtgcacttcatcgagcagaccgagaaaaccggcctgctgatcgacatgctgggc
aagcaccgtgacgaatcggcgctggtcttcgcgcgcaccaagcacggggccgagcggctg
atgaagacgctggaccgcgcgggcttctccgccgcgtcggtgcacggcaacaagagccag
ggccagcgtgagcgcgcgctgcgcggcttccgcgccggtgacctgcgcgtgctggtcgcg
accgacgtggccgcgcgcggcatcgacgtccccgaggtgcgccacgtctacaactacgac
ctgccgaacgtgccggacaactacgttcaccgcatcggccggaccgcccgcgcgggccgc
gacggcgccgccgtcgcgttctgtgcgcccgccgagatgggcgagctgcgcgacatcgag
aaggtcatgggcaaggcgatcccggtggccggcggcgagccgtgggccggtgctccgtcc
gaaggccgcggcaagaagcccggcggcggcggtggccgcggtcggcgccgctcgggcggc
ggtggtggcaatggcggtggcaatggcggcggaggcggccagcccgcccgcaatcgccgt
ccccgccgcggacgccgcgcggcctga
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