KEGG   Roseivivax marinus: LVO79_04270
Entry
LVO79_04270       CDS       T08313                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rmh  Roseivivax marinus
Pathway
rmh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rmh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LVO79_04270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rmh03019]
    LVO79_04270
Messenger RNA biogenesis [BR:rmh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LVO79_04270
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 PDEase_II
Other DBs
NCBI-ProteinID: UMA65686
LinkDB
Position
842500..844167
AA seq 555 aa
MSGNRTIYLPLGGAGEIGMNAYVYGYGKPGEEELILVDLGVTFPDMDTSPGVDLIFPDIA
WLAERKDRLKAIFITHAHEDHVGGVGHLWERLGAPVYARAFTANIARRKMDEHGLKPEYV
QTASAWPETIEVGPFTVGFLPISHSIPESSALVIDTPDGRFVHTGDFKIDLTPVVGEAFD
RALWEDVAKTGVKALICDSTNVFSAHEGRSEATVGPEIERLLSEAKGMVVATTFASNVAR
LKTLAEAGKRAGRSVVLLGRAMRRMVEAAVETGVLRDFPATVPIEEAGQIPRENLMLIVT
GSQGERRAASAQLARGKHHGIEIGDGDLFLFSSKTIPGNERGVIRIINMLSERGVDVVDD
SAGRYHVSGHANRPDLEAMQDITDPQMVVPMHGEHRHLREHTKMAQARGRQGVLAVNGTM
VDLSGNEPKVVDFVETGRTYLDGSIKVGALDGVVRDRIRMALNGHATVTLVLDEEDEPLG
DPWVDLMGLPETGRSRQPLTEVLEESAAAALGRAGKKVLKDDDALEEALRRAVRNGAQDE
IGKKPEVTVVVSRLS
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgagcggaaaccgcaccatctacctgcccctcgggggggcgggcgaaatcggcatgaac
gcctacgtctacggctatggcaagccgggcgaggaagagctgatcctcgtcgatctcggc
gtgaccttccccgacatggacacgagcccgggcgtcgacctgatcttccccgacatcgcg
tggctggccgagcgcaaggaccggctgaaggccattttcatcacccacgcgcacgaggac
cacgtcggcggcgtcggccacctgtgggagcgtctcggcgcgccggtctatgcgcgcgcc
ttcaccgccaacatcgcgcgccgcaagatggacgagcacgggctgaagcccgagtacgtc
cagacggcctcggcctggcccgagaccatcgaggtcgggcccttcaccgtgggtttcctg
ccgatctcgcactcgatccccgaaagctcggcgcttgtgatcgacacgcccgacgggcgc
ttcgtgcacaccggcgacttcaagatcgacctcaccccggtggtgggcgaggcgttcgac
cgcgcgctgtgggaggacgtggccaagacaggcgtgaaggcgctgatctgcgactccacc
aacgtcttctcggcgcatgagggccggtccgaggccaccgtcggccccgagatcgagcgt
cttctgtccgaggccaagggcatggtcgtcgcgaccaccttcgcgtcgaacgtggcgcgc
ctcaagacgctggccgaggccggcaagcgggccgggcggtcggtggtgcttctgggccgg
gccatgcggcgcatggtcgaggctgcggtcgagactggtgtgctgcgcgacttcccagcc
accgtgccgatcgaagaggccggccagatcccgcgcgagaacctcatgctgatcgtgacc
ggcagtcagggcgagcggcgcgccgcgtcggcacagctggcacgcggcaagcaccacggg
atcgagatcggcgacggcgacctgttcctgttctcgtccaagaccattccaggcaacgaa
cgcggcgtgatccggatcatcaacatgctgtccgagcgcggcgtggacgtcgtcgacgac
agcgccgggcgctatcacgtctccggtcacgccaaccggcccgacctcgaggccatgcag
gacatcaccgatccccagatggtggttcccatgcacggcgagcaccgccacctgcgcgag
cataccaagatggcgcaggcgcgcggtcggcagggcgtgctggcggtcaacggaacgatg
gtggacctttcgggcaacgagccgaaggtggtcgacttcgtggagaccgggcgcacctat
ctcgacggctcgatcaaggtgggggcgctggacggcgtggtgcgtgaccgcatccgcatg
gcgttgaacggccatgccacggtgacgctggtgctcgacgaagaggacgagccgttgggc
gatccgtgggtggacctgatgggcctgcccgaaaccggccgctcgcgtcagccgctgacc
gaagtgctggaagagtccgcggccgcggcgctcgggcgcgcgggcaagaaggtgctcaag
gacgatgacgcgctggaagaggcgctgcgccgcgccgtgcggaacggcgcgcaggacgag
atcggcaagaaacccgaggtcaccgtggtggtcagccgcctgtcgtga

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