Roseivivax marinus: LVO79_04270
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Entry
LVO79_04270 CDS
T08313
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rmh
Roseivivax marinus
Pathway
rmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVO79_04270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmh03019
]
LVO79_04270
Messenger RNA biogenesis [BR:
rmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVO79_04270
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
UMA65686
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Position
842500..844167
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AA seq
555 aa
AA seq
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MSGNRTIYLPLGGAGEIGMNAYVYGYGKPGEEELILVDLGVTFPDMDTSPGVDLIFPDIA
WLAERKDRLKAIFITHAHEDHVGGVGHLWERLGAPVYARAFTANIARRKMDEHGLKPEYV
QTASAWPETIEVGPFTVGFLPISHSIPESSALVIDTPDGRFVHTGDFKIDLTPVVGEAFD
RALWEDVAKTGVKALICDSTNVFSAHEGRSEATVGPEIERLLSEAKGMVVATTFASNVAR
LKTLAEAGKRAGRSVVLLGRAMRRMVEAAVETGVLRDFPATVPIEEAGQIPRENLMLIVT
GSQGERRAASAQLARGKHHGIEIGDGDLFLFSSKTIPGNERGVIRIINMLSERGVDVVDD
SAGRYHVSGHANRPDLEAMQDITDPQMVVPMHGEHRHLREHTKMAQARGRQGVLAVNGTM
VDLSGNEPKVVDFVETGRTYLDGSIKVGALDGVVRDRIRMALNGHATVTLVLDEEDEPLG
DPWVDLMGLPETGRSRQPLTEVLEESAAAALGRAGKKVLKDDDALEEALRRAVRNGAQDE
IGKKPEVTVVVSRLS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaaaccgcaccatctacctgcccctcgggggggcgggcgaaatcggcatgaac
gcctacgtctacggctatggcaagccgggcgaggaagagctgatcctcgtcgatctcggc
gtgaccttccccgacatggacacgagcccgggcgtcgacctgatcttccccgacatcgcg
tggctggccgagcgcaaggaccggctgaaggccattttcatcacccacgcgcacgaggac
cacgtcggcggcgtcggccacctgtgggagcgtctcggcgcgccggtctatgcgcgcgcc
ttcaccgccaacatcgcgcgccgcaagatggacgagcacgggctgaagcccgagtacgtc
cagacggcctcggcctggcccgagaccatcgaggtcgggcccttcaccgtgggtttcctg
ccgatctcgcactcgatccccgaaagctcggcgcttgtgatcgacacgcccgacgggcgc
ttcgtgcacaccggcgacttcaagatcgacctcaccccggtggtgggcgaggcgttcgac
cgcgcgctgtgggaggacgtggccaagacaggcgtgaaggcgctgatctgcgactccacc
aacgtcttctcggcgcatgagggccggtccgaggccaccgtcggccccgagatcgagcgt
cttctgtccgaggccaagggcatggtcgtcgcgaccaccttcgcgtcgaacgtggcgcgc
ctcaagacgctggccgaggccggcaagcgggccgggcggtcggtggtgcttctgggccgg
gccatgcggcgcatggtcgaggctgcggtcgagactggtgtgctgcgcgacttcccagcc
accgtgccgatcgaagaggccggccagatcccgcgcgagaacctcatgctgatcgtgacc
ggcagtcagggcgagcggcgcgccgcgtcggcacagctggcacgcggcaagcaccacggg
atcgagatcggcgacggcgacctgttcctgttctcgtccaagaccattccaggcaacgaa
cgcggcgtgatccggatcatcaacatgctgtccgagcgcggcgtggacgtcgtcgacgac
agcgccgggcgctatcacgtctccggtcacgccaaccggcccgacctcgaggccatgcag
gacatcaccgatccccagatggtggttcccatgcacggcgagcaccgccacctgcgcgag
cataccaagatggcgcaggcgcgcggtcggcagggcgtgctggcggtcaacggaacgatg
gtggacctttcgggcaacgagccgaaggtggtcgacttcgtggagaccgggcgcacctat
ctcgacggctcgatcaaggtgggggcgctggacggcgtggtgcgtgaccgcatccgcatg
gcgttgaacggccatgccacggtgacgctggtgctcgacgaagaggacgagccgttgggc
gatccgtgggtggacctgatgggcctgcccgaaaccggccgctcgcgtcagccgctgacc
gaagtgctggaagagtccgcggccgcggcgctcgggcgcgcgggcaagaaggtgctcaag
gacgatgacgcgctggaagaggcgctgcgccgcgccgtgcggaacggcgcgcaggacgag
atcggcaagaaacccgaggtcaccgtggtggtcagccgcctgtcgtga
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