Roseivivax marinus: LVO79_05485
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Entry
LVO79_05485 CDS
T08313
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rmh
Roseivivax marinus
Pathway
rmh03410
Base excision repair
rmh03430
Mismatch repair
rmh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LVO79_05485 (recJ)
03430 Mismatch repair
LVO79_05485 (recJ)
03440 Homologous recombination
LVO79_05485 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmh03400
]
LVO79_05485 (recJ)
DNA repair and recombination proteins [BR:
rmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LVO79_05485 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LVO79_05485 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVO79_05485 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
UMA65912
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Position
1110314..1112071
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AA seq
585 aa
AA seq
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MVADRPDSFLGVEASLSGRRWIGPSPEVARQAEAIGQATGLSPSLCQTLARLGVPCEGAL
DYLEPTLKALLPDPASLRDMHKAAARVCRAVRDRERIAIFADYDVDGGASAALLIDWLRQ
QGRAATLYIPDRIDEGYGPNEPAMAELARGHDLIVCVDCGTLSHGPIAAAAGTDVVVLDH
HLGGETLPDAHAVVNPNRQDEDGSLGHLCAAAVVFLMLVECGRQMREAGAAGPDLMPLLD
LVALATVADVAPLIGVNRALVRTGLKVMARRARPGLVALGDAARLDTAPTSYHLGYVLGP
RVNAGGRIGKADLGARLLSETDPHTARAMADRLEQLNVERREVEASVRAAALAQAEERGL
DAPLVWAAGEGWHPGVVGIVASRLKELTNRPSIVIGFDGDTGKGSGRSVAGVDLGASIQR
LAAEGLLEKGGGHRMAAGLTVARDKLEPAMARLSELLARQGAGTGGAADLRLDGLLMPGA
ASVETIQDLDRVGPFGAGAPAPRFVFPDMRITFAKRVGEGHLRLSFGDGTGPTLSGIAFG
AFDGPLGGALADHRGARFHLAGRVEINDWQGRRSVQLRLEDAAPA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcggaccggccggactcctttctgggcgtggaggcctcgctttcggggcggcgc
tggatcggaccatcgcccgaggttgcgcgtcaggccgaggccatcgggcaggccaccggc
ctctcgccgagcctgtgccagacgctggcgcggctgggcgtgccgtgcgagggcgcgctc
gactatctcgaacctacgctgaaggcattgctgcccgatccggcctccctgcgcgacatg
cacaaggccgccgcacgggtctgccgcgccgtgcgcgaccgcgagcgcatcgcgatcttc
gccgactacgacgtcgacggtggcgcctccgccgcgttgctgatcgactggctgcgccag
cagggccgggcggccacgctctacattcccgaccgcatcgacgagggctacggccccaac
gagcctgccatggccgagcttgcccgcggccacgacctgatcgtctgcgtcgactgcggc
acgctctcgcacggtcccatcgccgccgccgcgggcaccgacgtcgtcgtgctggaccac
caccttggcggcgagacgctgcccgatgcccatgccgtggtgaaccccaaccggcaggac
gaggacggtagcctcgggcatctctgcgccgcggccgtggtgttcctgatgctggtcgag
tgcggccgccagatgcgcgaggccggcgccgcggggccggacctgatgccgcttctcgat
ctcgtggcgctggccaccgtggcggacgtggcgccgctgatcggggtgaatcgcgcgctt
gtccgcaccgggctgaaggtcatggcgcggcgcgcccgccccgggctggtggcgcttggc
gacgcggcgcggctcgacacggcacccacatcctaccatctgggctatgtcctcgggccg
cgcgtgaacgcgggcgggcgcatcggcaaggccgatctcggcgcccgtctcctgtccgag
accgatccccacaccgcccgcgcgatggccgaccggctggagcagctcaacgtcgagcgg
cgcgaggtcgaggcgtcggtgcgggccgcggcgctcgcgcaggccgaggagcgcggcctc
gacgcgcccttggtctgggccgcgggcgaggggtggcacccgggtgtcgtgggcatcgtc
gcctcgcgcctcaaggaactgaccaaccgtccgagtatcgtcatcggcttcgatggcgac
accggcaagggctcgggccgctcggtcgcgggcgtggacctcggcgcgtccatccagcgg
ctggcggccgaaggcctgctggagaagggagggggccaccgcatggccgccggcctgacg
gtggcgcgcgacaagctggagcccgccatggcgcggctgagcgagcttctggcgcggcag
ggagccggcaccggcggcgccgcggacctgcggctcgacggtctgctgatgcccggcgct
gcctcggttgagacgatccaggacctcgaccgcgtcggtcccttcggggcaggggccccg
gcgccgcgttttgtcttccccgacatgcggatcaccttcgccaagcgcgtgggcgaggga
cacctgcgcctgagcttcggcgacggcaccggcccgaccctgtcgggaatcgccttcggc
gccttcgacggcccgctcggcggcgcactggcggaccatcgcggcgcgcgattccacctc
gcgggacgggtcgagatcaacgactggcagggccggcggagcgtccagctgcgactcgag
gatgccgcgcccgcatga
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