Roseivivax marinus: LVO79_08675
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Entry
LVO79_08675 CDS
T08313
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rmh
Roseivivax marinus
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmh03016
]
LVO79_08675 (rnd)
Enzymes [BR:
rmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LVO79_08675 (rnd)
Transfer RNA biogenesis [BR:
rmh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LVO79_08675 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UMA66499
LinkDB
All DBs
Position
complement(1809594..1810754)
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AA seq
386 aa
AA seq
DB search
MHTITTTEDLRAFCERAQGQPYVTVDTEFLRERTYYSKLCLIQLALPSRGEDDAVLVDPI
EGAEMSLEPLMELFRDTSVVKVFHAARQDLEIFYVDHGVIPDPLFDTQVAAMVCGFGEQV
GYETLVKRIAKAQLDKSSRFTDWSRRPLSDAQKTYALADVTHLRDIYEYLDRRLRDTGRH
RWVVEEIETLTDPATYTTRPEDAWQRIKTRSSSPRFLALVQELAQFRETYAQERNIPRNR
VFKDDALSELASTKPQTMQDLGRSRLLLREARKGDIAEGILAAVKRGMDRPKDQLPQAEQ
GRDRQHNNPALADLLRVLLKAKTETSGVAPKLIASASDLDAIACGDRDLPAMKGWRYEVF
GEDAMKLCEGRIALSAKGRTLTVIDL
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgatcaccaccaccgaagatcttcgcgcgttctgcgagcgcgcccaaggccag
ccctacgtcaccgtcgataccgagttcctgcgcgagcggacctactattccaagctctgc
ctgatccagctcgcgctgccgtcgcggggcgaggacgacgcggtgctggtcgacccgatc
gagggcgcggagatgtcgctggagccgctgatggagctcttccgcgacacctcggtggtc
aaggtgttccacgccgcccggcaggacctcgagatcttctacgtcgatcacggcgtgatc
ccggacccgctcttcgacacgcaggtcgcggcgatggtctgcggcttcggcgaacaggtg
ggctacgagacgctggtcaagcgcatcgccaaggcgcagctcgacaagtcgtcgcgcttc
accgactggtcgcgccggccgctgtcggacgcgcagaagacatacgcgctcgcggacgtc
acgcacctgcgcgacatctacgaatatctggaccggcgcctgcgcgacacggggcggcac
cgctgggtggtcgaggagatcgagacgctgaccgatccggccacctacaccacgcgcccc
gaggacgcctggcagcgcatcaagacgcgctcgtcgagcccgcgcttcctcgcgctggtg
caggaactcgcgcagttccgcgaaacctacgcgcaggagcgcaacatcccccgcaaccgc
gtcttcaaggacgacgcgctgtccgagctcgcctcgaccaagccgcagaccatgcaggat
ctcggacggtcgcggctgctcctgcgcgaggcgcgcaagggcgacatcgccgagggcatc
ctcgccgcggtcaagcgcggcatggaccggcccaaggaccagcttccgcaggccgagcag
ggccgcgatcggcagcacaacaacccggcgctggcggacctgctacgggttctcctgaag
gccaagaccgagacctcgggcgtcgcgcccaagctgatcgccagtgcctcggacctcgac
gccatcgcctgcggcgaccgcgaccttccagcgatgaagggctggcgctacgaggtcttc
ggcgaggatgcgatgaagctttgcgagggccgcatcgcgctgtcggccaaggggcggacc
ctcacggtcatcgacctctga
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