Roseivivax marinus: LVO79_12180
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Entry
LVO79_12180 CDS
T08313
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmh
Roseivivax marinus
Pathway
rmh03420
Nucleotide excision repair
rmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVO79_12180
03430 Mismatch repair
LVO79_12180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmh03400
]
LVO79_12180
Enzymes [BR:
rmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVO79_12180
DNA repair and recombination proteins [BR:
rmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVO79_12180
MMR (mismatch excision repair)
Other MMR factors
LVO79_12180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DUF3553
DEAD
Motif
Other DBs
NCBI-ProteinID:
UMA63787
LinkDB
All DBs
Position
complement(2593795..2596173)
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AA seq
792 aa
AA seq
DB search
MSSFDEMDAFEGASLASRAMQARPTPYLDDLNPAQREAVETLDGPVLMLAGAGTGKTKAL
TARIVHLLNTGRARPNEILSVTFTNKAAREMKDRVGRMLGQTVEGMPWLGTFHAISVKLL
RRHAELVELKSNFTILDSDDQLRLMKQLIAASNIDEKRWPARQLANVIDGWKNRAITPDK
IPAAEAGAFNHEGPRLYAEYQARLRELNAVDFGDLLLHCVTIFQTHEDVLAQYQRWFRYI
LVDEYQDTNVAQYLWLRLLAAGHKNVCCVGDDDQSIYGWRGAEVGNILRFEKDFPGAHVV
RLEQNYRSTPHILAAASSVIEGNQGRLGKTLWTEADEGEKVRLIGHWDGDEEARWVGEEL
EAMQQGTRGMRPYSLDDCAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDAM
AYFRLVVSPDDDLAFERVVNTPKRGLGDKAQQTIQRIARDRGVNLVEGARIAVSEEAIRG
KGGAALRVLVDDLDRWGRLTGDPDLTHMELAEQVLDESGYTAMWQNDKTPEAPGRLENLK
ELIKALEGFENLSGFLEHVALVMDNETEAEGAKVSIMTLHAAKGLEFPAVFLPGWEDGLF
PSQRSMDEQGVKGLEEERRLAYVGITRAEEVCTISFAGNRRVFGQWQSQLPSRFIDELDE
AHVEVLTPPGLYGGGYGAAGMAASASPEIMARQQSDLHDRASRADVYNSPGWRRLQSRSG
ERPVSQPRESKTQVIDMNAVAAYVIGERVFHQKFGYGAVAAIEGDKVEVDFEKAGTKKVV
SRFICAADDVPF
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcttcgacgaaatggacgccttcgagggcgcgtcgctcgcctcgcgcgccatg
caggcccggccgaccccgtatctggacgacctgaaccccgcgcagcgcgaggcggtcgag
acactggacggaccggtgctgatgctggccggggcagggacgggcaagaccaaggcgctg
accgcgcgaatcgtgcacctgctgaacaccggccgggcgcgtccgaacgagatcctgtcg
gtcacgttcaccaacaaggccgcgcgcgagatgaaggaccgcgtgggccggatgctgggc
cagacggtggaggggatgccgtggctcggcaccttccacgcgatctcggtcaagctcctg
cgccgccatgccgagctggtggagctgaagtcgaacttcaccatcctcgacagcgacgac
cagctccggctgatgaagcagctcatcgcggcctccaacatcgacgagaaacggtggccg
gcgcggcagctggcgaacgtcatcgacggctggaagaaccgcgcgatcacgcccgacaag
atccccgcggccgaggccggcgcgttcaaccacgagggcccgcggctctacgcggaatac
caggcccgcctgcgcgagctgaacgccgtcgatttcggcgacctgctgctgcactgcgtg
accatcttccagacccacgaggacgtgctggcgcagtaccagcgctggttccgctacatc
ctcgtggacgagtaccaggacaccaacgtcgcgcaatacctgtggctgcggctgctggcg
gcggggcacaagaatgtctgctgcgtgggggacgatgaccagtcgatctacggctggcgc
ggcgcggaggtgggcaacatcctgcgcttcgagaaggatttccccggcgcccacgtggtc
cgcctggagcagaactaccgctcgaccccgcacatcctcgccgcagcgtcttcggtcatc
gaaggcaaccagggccgcctgggcaagacgctctggaccgaggccgacgagggcgaaaag
gttcgtctgatcggccactgggacggcgacgaggaagcccgctgggtcggcgaggaactg
gaagcgatgcagcagggcacgcgcgggatgcggccctacagcctcgacgactgcgccatt
ctcgtgcgcgcctcgcaccagatgcgcgccttcgaggaccgcttcctgaccatcgggctg
ccctaccgcgtgatcggcggcccccggttctacgagcggatggagatccgcgacgccatg
gcctacttccggctggtggtgtcgcccgatgacgacctcgccttcgagcgcgtggtcaac
acgcccaagcgcggcctcggcgacaaggcccagcagaccatccagcgcatcgcccgggac
cgcggcgtgaacctcgtggagggcgcgcgcatcgcggtgtccgaggaagcgatccgcggc
aagggcggcgcggcgctgcgggtgctggtggacgatctcgaccgctggggccggctgacc
ggcgatccggacctgacccacatggaactggccgagcaggtgctggacgaaagcggctac
accgcgatgtggcagaacgataagacgcccgaggcgccgggccggctggagaacctcaag
gagctgatcaaggcgctcgagggcttcgagaacctgtcgggcttcctcgagcacgtggcg
ctggtcatggacaacgagaccgaggccgagggcgccaaggtgtcgatcatgaccctgcac
gcggccaagggccttgagtttcccgccgtgtttctgccgggctgggaggacgggctgttc
ccctcgcagcgttcgatggacgagcagggggtcaagggcctcgaggaagagcgacgtctc
gcgtacgtcggcatcacccgggccgaggaggtctgcacgatctcgttcgcgggcaaccgc
cgcgtcttcggccaatggcagagccagctgccctcgcgcttcatcgacgagctcgacgag
gcccacgtggaggtgctgaccccgccggggctctatggcggcggctacggggcggcgggc
atggcggcaagcgcctcgcccgagatcatggcgcgccagcagagcgacctgcacgaccgc
gcgagccgcgcggacgtctacaattcgccgggctggcgccgcctgcagtcccggtcgggc
gagcggcccgtgagccagccgcgcgagagcaagacccaggtgatcgacatgaacgccgtc
gccgcctacgtgatcggtgagcgggtgttccaccagaaattcggctatggcgcggtcgcc
gcaatcgagggcgacaaggtcgaggtcgacttcgagaaggcaggcaccaagaaggtggtc
tcgcgcttcatctgcgccgccgacgacgtgcccttctga
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