Roseivivax marinus: LVO79_12690
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Entry
LVO79_12690 CDS
T08313
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmh
Roseivivax marinus
Pathway
rmh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVO79_12690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmh03021
]
LVO79_12690 (rpoC)
03400 DNA repair and recombination proteins [BR:
rmh03400
]
LVO79_12690 (rpoC)
Enzymes [BR:
rmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVO79_12690 (rpoC)
Transcription machinery [BR:
rmh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVO79_12690 (rpoC)
DNA repair and recombination proteins [BR:
rmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVO79_12690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
UMA63882
LinkDB
All DBs
Position
complement(2699051..2703310)
Genome browser
AA seq
1419 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIDPGLTDLTEGQMLTEEEFMDAQDQYGMDAFT
ANIGAEAIREMLAKIDLESEAEHLREELKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTIAREGMKGEGMVFGSVEEVEHAL
NAGEVHMHANIQCRVKQIDDEGQEVVKRYDTTPGRVRLGALLPMNAKAPFELVNTLLRKK
DVQRVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPESKWPIVEETRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMTTISTSKHAEDGSEEEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIRMQDCGTERSITAEAAINDGEIIASLGERLLGRV
AAEDIVKPGTDEVIIKEGQLIDERMSDAVEEHAVQTARIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGAQQSFLEASQSGKIVFENPN
TLVNAAGETLVMGRNMKVLITDEHGAERASHKVGYGTKLFVEEGQSIERGDKLFEWDPYT
LPIIAEKDGVARHVDLVNGVAVREETDDATGMSQKIVTDWRAAPKGNELKPEIILQDENG
EPVRNDQGNPVTYPMSVDAVLSCEDGQQIKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRVSIEPADDSLEPKEYMIPKGKHIPVVEGDYIQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
ILDSGETTLLKGEHVDKIEFDTANAKAEAKGLRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKVDKLVGLKENVIVGRLIPAGTGGATQKVRKIATDRDNVVIDARRT
EAEEAARLAAPEESASGSSDVVGGDDFDTLIVDTPESRE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcacgaacaacccgttcaacccgctgaccccgcccaaggtctttgac
gagatcaaggtgtcgctggcgtcgcccgagcggatcctcagctggtccttcggcgagatc
aagaagcccgagacgatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgc
gcgcgcatcttcggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatg
aagtatcgcggcgtcgtctgcgagaagtgcggcgtcgaggtgacgctgcagaaggtccgg
cgcgagcgcatgggccatatcgagctggccgcgccctgcgcccacatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgacctcgagcgcgtg
ctctacttcgagaactacgtggtcatcgacccgggtctgaccgacctcaccgaaggtcag
atgctgaccgaagaagagttcatggacgcccaggaccagtacggcatggacgcgttcacg
gcgaacatcggcgccgaggcgatccgcgagatgctggcgaagatcgacctcgagtccgag
gccgagcacctgcgcgaagagctcaaggaagccaccggcgagctcaagccgaagaagatc
atcaagcgtctcaaggtcgtcgagagcttcctcgagtcgggcaaccgtcccgagtggatg
gtgatgactgtgatcccggtcatcccgccggaactgcgcccgctcgttccgctggacggc
ggccggttcgcgacgtcggacctcaacgacctgtatcgccgcgtcatcaaccggaacaac
cgcctcaagcggctgatcgagctgcgcgcgccggacatcatcgtccggaacgagaagcgg
atgcttcaggaatccgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcacc
ggtgccaacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgg
ttccgtcagaacctgctcggcaagcgcgtggacttctcgggccgttcggtcatcgtgacc
ggcccggaactgaagctgcaccagtgtggcctgccgaagaagatggcgctcgagctgttc
aagccgttcatctactcgcggctcgaggccaaaggcctgtcgtccacggtgaagcaggcg
aagaagctggtcgagaaggagcgtcccgaggtctgggacatcctcgacgaggtgatccgc
gagcacccggttctgctgaaccgtgcgccgacgctgcaccgtctgggtatccaggcgttc
gaacccaccctgatcgagggcaaggcgatccagctgcacccgctcgtctgctcggcgttc
aacgccgacttcgacggtgaccagatggccgtgcacgttccgctgtcgctcgaggcgcag
ctcgaagcgcgcgtcctgatgatgtccacgaacaacgtgctgtcgcccgcgaacggcgcg
ccgatcatcgtgccgtcgcaggacatgatcctcggcctctactacctcaccatcgcgcgt
gagggcatgaagggcgaaggcatggtcttcggctcggtcgaagaggtcgagcacgcgctc
aacgccggcgaagtgcacatgcacgccaacatccagtgccgcgtgaagcagatcgacgac
gagggccaggaggtggtgaagcgctacgacaccacgccgggccgggtgcgtctgggcgcg
ctgctgccgatgaacgccaaggcgccgttcgaactggtcaacacgctgctgcggaagaag
gacgtccagcgcgtcatcgacaccgtctaccgctactgcggtcagaaggagtcggtcatc
ttctgcgaccagatcatgtccatgggcttcaaggaggcgttcaaggcgggcatctccttc
ggcaaggacgacatggtcatccccgagtccaagtggccgatcgtggaagagacccgcgag
caggtgaaggacttcgagcagcagtacatggacggcctgatcacccagggcgaaaagtac
aacaaggtcgtggacgcctggtcgaagtgcaacgacaaggtcaccgaggccatgatgacc
acgatctcgacctccaagcatgcggaggacgggtccgaggaagaaccgaactcggtgtac
atgatggcgcactccggtgcgcgtggctcggtcacccagatgaagcagctgggcgggatg
cgcggcctgatggcgaagccgaacggcgacatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttctcgagtacttcaactcgacccacggcgcccggaagggcctg
tcggacaccgcgctcaagacggcgaactcgggctacctgacccgtcgtctcgtggacgtg
gcgcaggactgcatcatccgcatgcaggattgtggcaccgagcggtcgatcaccgccgag
gcggcgatcaacgacggcgagatcatcgcgtcgctcggcgagcgtctgctgggccgcgtc
gcggccgaggacatcgtgaagccgggcaccgacgaggtgatcatcaaggaaggccagctc
atcgacgagcgcatgtcggatgcggtggaagagcacgcggtgcagaccgcgcgcatccgc
tcgccgctgacctgcgaggccgaagagggcgtctgcgccatgtgctacgggcgtgacctc
gcgcgcggcacgatggtgaacgtcggcgaggccgtcggcatcatcgcggcgcagtcgatc
ggcgagccgggcacgcagctgaccatgcggaccttccacatcggcggcgtggcacagggt
gcccagcagtcgttcctcgaagcgtcgcagtcgggcaagatcgtgttcgagaacccgaac
acgctggtgaacgcggccggcgagacgctggtgatgggccggaacatgaaggttctcatc
accgacgagcacggcgccgaacgcgcgagccacaaggtcggctacggcaccaagctcttc
gtcgaggaaggccagtcgatcgagcgtggcgacaagctgttcgagtgggacccctacacc
ctgccgatcatcgccgagaaggacggtgtggcccgtcacgtcgacctcgtgaacggcgtt
gccgtgcgcgaagagaccgacgacgccacgggcatgagccagaagatcgtgaccgactgg
cgcgccgcgcccaagggcaacgagctcaagcccgagatcatcctgcaggacgagaacggc
gagccggtgcggaacgaccagggcaacccggtcacctacccgatgtcggtcgatgcggtc
ctgtcgtgcgaggacggccagcagatcaaggccggtgacgtggtcgctcggatcccgcgc
gagggcgccaagacgaaggacatcaccggcggtctgccgcgggtggcggaactcttcgag
gcgcgtcgtcccaaggaccacgccatcatcgccgagatcgacggctacgtgcgcttcggg
aaggactacaagaacaagcgccgcgtctcgatcgagcccgccgacgacagcctggagccc
aaggagtacatgatccccaagggcaagcacatcccggttgtcgaaggggactacatccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgtcgatcatgggt
gtcgaagcgctggcgaactacatgatcgacgaggtgcaggacgtctaccggctgcagggc
gtgaagatcaacgacaagcacgtcgaggtcatcgtccggcagatgctgcagaagtgggag
atcctcgacagcggcgagaccacgctgctcaagggcgaacacgtcgacaagatcgagttc
gacaccgcgaacgccaaggccgaggccaagggtctgcgccccgcacagggcgagccgatc
ctgctgggcatcaccaaggcgtcgctgcagacccggtccttcatctcggccgcctcgttc
caggagacgacccgcgtgctcaccgaggcttcggtgcagggcaaggtcgacaagctggtg
ggcctcaaggagaacgtcatcgtgggccgcctgattccggcgggcaccggtggcgcgact
cagaaggtccgcaagattgccaccgaccgcgacaatgtcgtcatcgacgcccgtcgcacc
gaggcggaggaggccgcgcgcctcgccgcaccggaagaaagcgcctcgggcagctcggat
gtcgtcggcggcgacgacttcgacacgctgatcgtggacaccccggaaagccgcgagtga
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integrated database retrieval system
