Roseivivax marinus: LVO79_17520
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Entry
LVO79_17520 CDS
T08313
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rmh
Roseivivax marinus
Pathway
rmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVO79_17520 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmh03019
]
LVO79_17520 (recQ)
03400 DNA repair and recombination proteins [BR:
rmh03400
]
LVO79_17520 (recQ)
Enzymes [BR:
rmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVO79_17520 (recQ)
Messenger RNA biogenesis [BR:
rmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVO79_17520 (recQ)
DNA repair and recombination proteins [BR:
rmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LVO79_17520 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
UMA64775
LinkDB
All DBs
Position
complement(3706234..3708273)
Genome browser
AA seq
679 aa
AA seq
DB search
MADAPALLRDVFGFDAFRAGQEEIVDAVAAGENVLAIMPTGGGKSLCFQLPALLRPGVTL
VVSPLIALMRDQVRGLREAGVAAGALTSANTPEETDAVWDALSAGELKLLYLAPERLASG
GTQRMLANAGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADAETQD
EIVTRLFDGEAPRAFLRGFDRPNLHLAFQPKDSPRRQILAFAAARRSQSGIVYCGTRAKT
ETLAQALREDGHPALSYHGGMDPEDRRGVEDRFATEDGLIVVATVAFGMGVDKPDIRWVA
HADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPEDIRLRRSQIDEGNAPAERRAADHGRL
NALLGLAEAMECRRKSLLHYFGEDHPGDCGGCDLCDSPPETFDGTEAVRKALSAALRTGE
SFGAGHLIDILTGNETDKVRQRGHESLPTFGVGRDLSRGQWQAVFRQIMGRDLMRPDPER
HGALWMTEAARPILRGEDTIRLRRDTIDRAKATRPQAKALVSEEHAPMLAALKARRRALA
EEARVPAYVIFPDRTLIEMAEARPETLDDMARISGVGAKKLDRYGRTFLEVIAGEVDDMH
PARQRLAGREEGALFDRLHAMQTALARGPEGTDKPLSCSAAQLARVAEARPRNHDALARI
LGDKRADRFGTAFLGVLSD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcccccgcgcttctgcgcgacgtattcggattcgacgccttccgcgccggc
caggaagagatcgtggacgccgtcgccgcgggcgagaacgtccttgccatcatgcccacg
ggcggcggcaagtcgctgtgcttccagcttcccgccctgctgcggcccggggtcacgctg
gtggtctcgccgctgatcgcgctgatgcgcgaccaggttcgcggcctgcgcgaggccggg
gtcgccgccggggcgctgacgtcggccaatacacccgaggagaccgacgccgtctgggac
gcgctgtcggcgggcgagctgaagctcctttacctcgcccccgagcggctcgcctccggg
ggcacccagcggatgctggccaatgccggggtcagcctgatcgccgtcgacgaggcgcac
tgcgtcagccagtggggccacgacttccgccccgactatctccggatcggagagctgcgc
cgcgcgctcgacgtgccgttggccgccttcaccgccaccgccgatgccgagacgcaggac
gagatcgtcacccggctcttcgacggcgaagcgccgcgcgccttcctgcgcggcttcgac
cgtccgaacctgcaccttgccttccagcccaaggacagcccccgccgccagatcctcgcc
ttcgccgccgcacgtcgcagccagtcgggcattgtctattgcggcacccgcgcaaagacc
gagacgctggcccaggcgctccgcgaggacggacaccccgcgctcagctaccacggcggc
atggacccggaagaccgccgcggggtcgaggaccgcttcgccaccgaggacggactgatc
gtcgtggcgaccgtcgccttcggcatgggcgtagacaagcccgacatccgctgggtcgcc
cacgccgacctgcccaagtcgatcgaggcctactaccaggagatcggccgcgccggccgc
gatggcgcgccggccgaaacgctgaccctcttcggccccgaggacatccgcctgcgccgc
tcgcagatcgacgagggcaacgccccggccgagcgccgcgccgccgatcacggccgcctc
aacgcgctcctcggtctcgccgaggcgatggaatgccggcgcaagtcgctgctgcactat
ttcggagaggaccatcccggcgattgcggcggctgcgacctctgcgacagcccgcccgag
accttcgacggcaccgaggccgtccgcaaggcgctctccgccgcgctccgcaccggcgag
agcttcggcgcggggcacctgatcgacatcctcaccggcaacgagacggacaaggtgcgc
cagcgcggtcacgaaagcctgccgaccttcggcgtcggccgcgacctctcgcgcgggcag
tggcaggccgtgttccgccagatcatgggccgcgacctgatgcgcccggatcccgaacgc
cacggcgcgctctggatgaccgaggccgcccgcccgatcctgcgcggcgaggacacgatc
cgcctgcgccgcgacacgatcgaccgcgccaaggccacgcgaccacaggcgaaggcgctg
gtctccgaggaacacgcaccgatgctcgccgccctcaaggcccgccgccgcgcgctggcg
gaagaggcgcgcgtcccggcctacgtcatcttccccgaccgcaccctcatcgagatggcc
gaggcccgccccgagacactcgacgacatggcgcgcatttccggcgtcggcgccaagaaa
ctcgaccgctacggccgcaccttcctcgaggtgatcgcaggggaagtggacgacatgcac
cccgcccgccagcgcctcgccggccgcgaggaaggcgcgctgttcgaccgcctccacgcc
atgcagaccgcgctcgcccgtggcccggaaggcaccgacaagccgctctcctgctccgcc
gcacagctcgcccgcgtggccgaggcccggccgcgcaaccatgacgccctcgcccgcatc
ctcggcgacaagcgggccgaccgcttcggcaccgccttcctcggcgtcctctcggactga
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