Rickettsia massiliae AZT80: RMB_01870
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Entry
RMB_01870 CDS
T01758
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03030
DNA replication
rmi03430
Mismatch repair
rmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RMB_01870 (dnaE)
03430 Mismatch repair
RMB_01870 (dnaE)
03440 Homologous recombination
RMB_01870 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmi03032
]
RMB_01870 (dnaE)
03400 DNA repair and recombination proteins [BR:
rmi03400
]
RMB_01870 (dnaE)
Enzymes [BR:
rmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RMB_01870 (dnaE)
DNA replication proteins [BR:
rmi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RMB_01870 (dnaE)
DNA repair and recombination proteins [BR:
rmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RMB_01870 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AFB31274
UniProt:
H6QHX4
LinkDB
All DBs
Position
351831..355376
Genome browser
AA seq
1181 aa
AA seq
DB search
MRPEFIHLRTQSSYSFLESALTIEKVVELASANKMPAICLADKGNLFGSLEFALYAVKKG
LQPIHGVILNIKYDIDIFAQILLIAKDETGYKNLLKLSSLTFTKDDRKICDHIDFEDLIE
YQEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMRHELPEEQFIED
SYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPH
EMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNFATKDISETDLIRKDAKEGLLARL
ATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGP
GRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRS
KYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAMREV
PELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVY
KDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDN
KTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKH
KLQQPDYLHALLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEME
EQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYGVLSYQTAYLKANYPAE
FLVACLNLELNNHDKINFFLQEAKDNGIKITAPNINISEGYFSVKFSDTVIPHSVRPVIP
RLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFI
ERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSLIKV
SSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPD
GTNRVSLAGVIQKKDSRMSARGRFVTLVLSDPENIFELSIFSEEVLKDYVHLLDVKSLVV
VNCDIVKDEGGIKLTAKSFSSIEDAINNKQFELQFYPQNHEELRQIVTLLAARINNEDQS
NARATIYLQSADVKNFVAKITLPEKFLLQGQDFEILKGYSK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctgaatttattcatttaagaactcaaagttcttattcttttctcgaaagtgca
ttaacaattgagaaggtagtagaacttgcttcagcgaataaaatgcctgctatttgtttg
gcagataagggaaatttattcggctcattagagtttgcattatatgcagtaaaaaaagga
ctgcagccgatacacggagttattctaaatataaaatacgatatagatatttttgctcaa
attttgcttatagctaaagatgaaactggctataaaaatttactcaaactatcaagcctt
acttttactaaagatgaccgtaagatatgcgatcacattgattttgaagatttaatcgaa
tatcaagaaggattaataggattatgctgttataccgacggtattgtcggaaaatgctta
ctagctcgcaacgaggagcaagcgatgctgtttgcacgtaaattacaggaaattttagga
gatcgtttttactttgagattatgagacatgagctaccggaagaacagtttattgaggat
agttatattagaattgctgctgagcttgctattccgcttgttgctactaataaagttttg
tttagtgagaaaagcatgcatgatgcacatgatgtattgttatgtatatcagccggtgtt
actaaagaatatccggatcgaaaaacagttagcgaaaattgttattttagatcaccgcat
gagatgatagagcttttttccgatttacctagtgccatccaaaataccgtgaatttaaga
gagcgttgttattttgccgcacatgcaaacccgccgatgctgcctaattttgccaccaaa
gatattagtgaaacggatttaattagaaaagatgcaaaagaagggttgcttgcaaggctt
gctacaaagtttaaatctgaaaatatttcgttagagaatcaagaagaattgaaaaccgaa
tattttgctcgtcttaattatgagctggatattatctgtaatatgaattttgccggttat
tttttgattgtatccgattttattaaatggagtaaaaaagagggtattttagtcggaccg
ggtagaggatcgggagcaggctcggttgttgcttggagcttgcttattactgatctcgat
ccgattaaatttggcttattatttgaaagatttttaaatcctgaacgtatttcaatgcct
gattttgatattgatttttgtcaggaaaggcgtgaggaagtaattaattacgtacgttcc
aaatacggtaataatagagtaggacagattataactttcggtaagatgcaggcaaaggct
gtaattaaggatgtcgctcgtgtacttagcttaccttataaattcgctgattatctaacg
gagcttgtcccttttagtgcagtgaatccagttagcttagaacaggcaatgcgtgaagtt
ccggagcttgcaaatgccgctaaaggtaatgggctgtataatttagacggtgaagcggag
ttaattaagctcgtgcttgatacttcgttaattcttgaggggctgcataggcattcctca
actcatgctgcaggaatcgtaatagcaggtactgatttagtcgatatagtaccggtatat
aaagatgctaactccgatatgctggtagtcggttattctatgaaatatgccgagattgcc
ggtttaattaaatttgattttttagggctacaaaccctaacggttattaccgattgtaag
aaactgcttaaagagcaagggatagaagtagattttaacaatatgacgtttgatgataat
aagacttatcaaatgttgtgtaaaggtaaaggagtcggcgttttccaatttgaaagtatc
gggatgaaagatgcacttagacgccttaaacctgattctatacatgatttgatagctctt
ggtgcgttataccgtcctggtcctatggaaaatattcctacctatatagcttgtaagcat
aaattacaacagcctgattatttacatgcgctattgaagccaatcttagaagaaacttac
ggagtggtgatatatcaggagcaggtacaaagaattgctcaggttcttgcaggttatacg
ctaggagctgccgatttacttcgtagagcaatgggtaagaagataaaaaaagaaatggag
gagcaggaagaaatttttgttaaaggagcaattgctaataatatttcggaatctcaagct
aaatccatttttgcgactgtggctaaatttgccggatacggttttaataaggcacatgct
gcgtcttacggtgttctttcataccaaactgcatatcttaaagctaattatcctgctgaa
tttttagtagcatgcttaaatcttgaattgaataatcacgataaaattaatttcttttta
caagaagcaaaagataacggcataaaaattactgcacctaatattaatatttctgaagga
tattttagtgtaaagttttcggacactgtcatcccgcatagcgtaaggcctgtcataccg
cgacttgatcgcggtatccaggaaatttcaaaagataccgtggtcaagccacggtatgac
atcgcgggtgcaataatcttcgccttaggtgctattaagggagtcacgccgaattttggt
aagttagtaacggatgagcgaaaagcaagaggggcgtttaaatcaattactgattttatt
gaaagattaccccccaaatctattaacagtaaattattggaaaatttaatcaagtcaggc
tgttttgatgagttgcatgataatcgattgcaattattgtcaagcattccaaaattgctt
tcttattcaacttcatatcacgaagagcaggaatctaatcaatttagcttaattaaagtt
tctagtttaagtccaactattttagtatcaagcgattatgccgataaaaatactttagcc
ttttatgaatttgaggctatgggtttatttatctctaatcatcctcttacggaatatcaa
gaaatatttagtcgtttaaatattttaaatactgcggatttgcataataacttacctgat
ggtactaaccgagtaagtcttgccggtgtaatacaaaaaaaggattctcgtatgtcggca
agaggtaggtttgtgacgctcgtgctttccgatcctgaaaatatctttgaacttagtatt
tttagtgaggaagttttaaaagattatgtacatttacttgatgttaaaagtttggtagtt
gttaattgtgacatagttaaagatgagggaggaataaaactaacggcaaaaagcttttca
tcaattgaggatgcaattaataataaacaatttgaactacagttttatccacaaaatcat
gaagaattacggcagatagtaaccttgcttgcagctcgtataaataacgaagatcagagt
aatgctagagctacaatctatttacaaagcgcagatgtaaagaattttgtagcaaaaatt
acattacctgaaaaattcttgctccaagggcaagattttgagattttaaaaggatatagt
aaatag
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